View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1677-Insertion-1 (Length: 493)
Name: NF1677-Insertion-1
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1677-Insertion-1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 8 - 493
Target Start/End: Complemental strand, 11487400 - 11486922
Alignment:
| Q |
8 |
tgattaataacattatatcacaataaaatcattgctatgtggatgaaaaaatggcaagcatatgcgagtttattaacacagttccatttttatgagaaaa |
107 |
Q |
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| T |
11487400 |
tgattaataacattatatcacaataaaatcattgctatgtggatgaaaaaatggcaagcatatgcgagtttattaacacagttccatttttatgagaaaa |
11487301 |
T |
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| Q |
108 |
ctgtatagagcttgcaaatgcagaaaagtgatgtgtacctcatgtaaatggtgaaaaataaataatatacaccatatgattgatgttataatactagcca |
207 |
Q |
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| T |
11487300 |
ctgtatagaacttgcaaatgcagaaaagtgatgtgtacctcatgtaaatggtgaaaaataaataatatacaccatatgattgatgttataatactagcca |
11487201 |
T |
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| Q |
208 |
aagaagtcatacacaccagtagccataaaatcattggagaaatgagaatggatatagatgcagaaaactaaacaaggtgaaaataattgattttttgtaa |
307 |
Q |
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| T |
11487200 |
aagaattcatacacaccagtagccataaaatcattggagaaatgagaatgg--atagatgcagaaaactaaacaaggtgaaaataattgattttttgtaa |
11487103 |
T |
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| Q |
308 |
ctaggaacttctatgagatgattacttacatgtggttttggtaaatctaacaaatttatctgaatgtgtaaaagtggctttta-ggtggagatgtgtatc |
406 |
Q |
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| T |
11487102 |
ctaggaacttctatgagatgattacttacatgtggttttggtaaatctaacaaatttatttgaatgtgtaaaagtggcttttagggtggagatgtgtatc |
11487003 |
T |
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| Q |
407 |
aaatgttctatgggtggaccatgatttagagccacctcacatatgactattannnnnnnccatcctattgcattctcattcgcccta |
493 |
Q |
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| T |
11487002 |
aaatgttctatgggtggaccatgatttagagccacctcacatatg--tatt----ttttccatcctattgcattctcattcgcccta |
11486922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 347
Target Start/End: Original strand, 5970410 - 5970497
Alignment:
| Q |
260 |
tatagatgcagaaaactaaacaaggtgaaaataattgattttttgtaactaggaacttctatgagatga-ttacttacatgtggttttg |
347 |
Q |
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| T |
5970410 |
tatatatgcagaaaactgaacaaaatgaaaattattga-tttgtgtaactaggcacttctattagatgatttatttacacgtggttttg |
5970497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 50 - 157
Target Start/End: Original strand, 17315636 - 17315743
Alignment:
| Q |
50 |
atgaaaaaatggcaagcatatgcgagtttattaacacagttccatttttatgagaaaactgtatagagcttgcaaatgcagaaaagtgatgtgtacctca |
149 |
Q |
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| T |
17315636 |
atgaagaaatggccagcatatgtgaatttatatacacagttccattgttatgagaaatctgtagaaaacttgcaaatgcaaaaaggttatgtgtgcctcg |
17315735 |
T |
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| Q |
150 |
tgtaaatg |
157 |
Q |
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| T |
17315736 |
tctaaatg |
17315743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 17315880 - 17315918
Alignment:
| Q |
225 |
agtagccataaaatcattggagaaatgagaatggatata |
263 |
Q |
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| T |
17315880 |
agtagccataaaatcgttggagaaatgagaatggatata |
17315918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 347
Target Start/End: Complemental strand, 19850949 - 19850868
Alignment:
| Q |
265 |
atgcagaaaactaaacaaggtgaaaataattgattttttgtaactaggaacttctatgagatgattacttacatgtggttttg |
347 |
Q |
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| T |
19850949 |
atgcagaaaactaaacaaaatgcaaattattgatttgt-gtaactaggcacttctatgtgatgatttatttaatgtggttttg |
19850868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 150
Target Start/End: Original strand, 18392379 - 18392409
Alignment:
| Q |
120 |
tgcaaatgcagaaaagtgatgtgtacctcat |
150 |
Q |
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| T |
18392379 |
tgcaaatgcagaaaagtgatgtgtacctcat |
18392409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 17230633 - 17230569
Alignment:
| Q |
265 |
atgcagaaaactaaacaaggtgaaaataattgattttttgtaactaggaacttctatgagatgatt |
330 |
Q |
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| T |
17230633 |
atgcagaaaactaaacaaaatgcaaattattga-tttgtgtaactaggcacttctatgtgatgatt |
17230569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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