View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1677-Insertion-10 (Length: 541)
Name: NF1677-Insertion-10
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1677-Insertion-10 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 7 - 541
Target Start/End: Complemental strand, 33411786 - 33411252
Alignment:
| Q |
7 |
agttgcctctgtgacagaaaattataggcttagagtggcaaaagaacatggattagttgaaagtggaggacaagttcctttgagtattttcattttgctt |
106 |
Q |
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| T |
33411786 |
agttgcctctgtgacagaaaattataggcttagagtggcaaaagaacatggtttagttgaaagtggaggacaagttcctttgagtattttcattttgctt |
33411687 |
T |
|
| Q |
107 |
cctcagtttatacttatgggaacagctgatgcatttttagaggttgcgaaaatcgagtttttctacgatcaagctccagaaagcatgaagagtattggaa |
206 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33411686 |
cctcagtttatacttatgggaacagctgatgcatttctagaggttgcgaaaatcgagtttttctatgatcaagctccagaaagcatgaagagtattggaa |
33411587 |
T |
|
| Q |
207 |
cttcatattcatcaactacattaggcgttggaaatttcatcagttcattccttttgtcgacagtatcgcatataactcaggaacatggtcataaagggtg |
306 |
Q |
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| T |
33411586 |
cttcgtattcttcaactacattaggcgttggaaatttcatcagttcattccttttgtcgacagtatcgcatataactcaggaacatggtcataaagggtg |
33411487 |
T |
|
| Q |
307 |
gattttaaacaatctgaatgattctcatcttgattactactatgcgttttttgcagtgttgaacttcttgaacttggctttcttcgcgtttgttacaagg |
406 |
Q |
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| T |
33411486 |
gattttgaacaatctgaatgattctcatcttgattactactatgcgtttttcgcggtgttgaacttcttgaacttggctttcttcgcgtttgttacaagg |
33411387 |
T |
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| Q |
407 |
ttttatgtatatagggctgaagtttcggattctatagacatgcttgccaatgaactgaaggaaaagaaagaggctaaccatgtgaaccttatagagtaag |
506 |
Q |
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| T |
33411386 |
ttttatgtatatagggctgaagtttcggattctatagacatgcttgccaatgaactgaaggaaaagaaagaggctaaccatgtgaaccttatagagtaag |
33411287 |
T |
|
| Q |
507 |
tgattggatctattaggaagaatgtttatgatcaa |
541 |
Q |
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| T |
33411286 |
tgattggatctattaggaagaatgtttatgatcaa |
33411252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 29 - 357
Target Start/End: Original strand, 15729971 - 15730299
Alignment:
| Q |
29 |
tataggcttagagtggcaaaagaacatggattagttgaaagtggaggacaagttcctttgagtattttcattttgcttcctcagtttatacttatgggaa |
128 |
Q |
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||||||||||| || || |||||||||||| ||||||||| ||||||| |||||| ||||| || |||||||| || ||||| ||| |||||||||||| |
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| T |
15729971 |
tataggcttagtgtagccaaagaacatggagtagttgaaaatggaggattagttccattgagcatattcattttactccctcaatttttacttatgggaa |
15730070 |
T |
|
| Q |
129 |
cagctgatgcatttttagaggttgcgaaaatcgagtttttctacgatcaagctccagaaagcatgaagagtattggaacttcatattcatcaactacatt |
228 |
Q |
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||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||| | || ||||| |||||| |||| || |
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| T |
15730071 |
cagctgatgcatttttagaggttgctaaaattgagttcttctatgatcaagctccagaaagcatgaagagcttgggcacttcttattcaatgactagctt |
15730170 |
T |
|
| Q |
229 |
aggcgttggaaatttcatcagttcattccttttgtcgacagtatcgcatataactcaggaacatggtcataaagggtggattttaaacaatctgaatgat |
328 |
Q |
| |
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| T |
15730171 |
aggcattggaaattttattagtacttttcttctatcaacagtttcacacatcactgaggaacatggtcacaaagggtggattttgaataatcttaatgct |
15730270 |
T |
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| Q |
329 |
tctcatcttgattactactatgcgttttt |
357 |
Q |
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| T |
15730271 |
tctcatcttgattactactatgcattttt |
15730299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 29 - 357
Target Start/End: Original strand, 15737574 - 15737902
Alignment:
| Q |
29 |
tataggcttagagtggcaaaagaacatggattagttgaaagtggaggacaagttcctttgagtattttcattttgcttcctcagtttatacttatgggaa |
128 |
Q |
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| T |
15737574 |
tataggcttagtgtagccaaagaacatggagtagttgaaaatggaggattggttccattgagcatattcattttgcttccacaatttatacttatgggaa |
15737673 |
T |
|
| Q |
129 |
cagctgatgcatttttagaggttgcgaaaatcgagtttttctacgatcaagctccagaaagcatgaagagtattggaacttcatattcatcaactacatt |
228 |
Q |
| |
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||||||| ||||| |||||||||| ||||| ||||| ||||| ||||||||||||||||||||||||||| |||| ||||| ||||||| |||| || |
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| T |
15737674 |
cagctgaagcattcatagaggttgctaaaattgagttcttctatgatcaagctccagaaagcatgaagagtcttggcacttcttattcattgactagctt |
15737773 |
T |
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| Q |
229 |
aggcgttggaaatttcatcagttcattccttttgtcgacagtatcgcatataactcaggaacatggtcataaagggtggattttaaacaatctgaatgat |
328 |
Q |
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| T |
15737774 |
aggtattggaagttttataagtacttttcttctatcaacagtttcacacatcactgaggaacatggtcacaaagggtggattttgaataatcttaatgct |
15737873 |
T |
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| Q |
329 |
tctcatcttgattactactatgcgttttt |
357 |
Q |
| |
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||||||||||||||||||||||| ||||| |
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| T |
15737874 |
tctcatcttgattactactatgcattttt |
15737902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 41 - 357
Target Start/End: Original strand, 15779685 - 15780001
Alignment:
| Q |
41 |
gtggcaaaagaacatggattagttgaaagtggaggacaagttcctttgagtattttcattttgcttcctcagtttatacttatgggaacagctgatgcat |
140 |
Q |
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||||| |||||||||||| || |||||| ||||||||| ||||| ||||| || ||||||||| ||| || ||| |||||||||||| ||| || || |
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| T |
15779685 |
gtggccaaagaacatggagtaattgaaaatggaggacaggttccattgagcatattcattttggctccacaatttgtacttatgggaatagcagaagccc |
15779784 |
T |
|
| Q |
141 |
ttttagaggttgcgaaaatcgagtttttctacgatcaagctccagaaagcatgaagagtattggaacttcatattcatcaactacattaggcgttggaaa |
240 |
Q |
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| T |
15779785 |
tcttagagggtgccaaaattgagtttttctatgaccaagccccagaaagcatgaagagccttgggagttcgtattccttaactactacgggcattggtag |
15779884 |
T |
|
| Q |
241 |
tttcatcagttcattccttttgtcgacagtatcgcatataactcaggaacatggtcataaagggtggattttaaacaatctgaatgattctcatcttgat |
340 |
Q |
| |
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|||| | || | || ||| | || ||||| || ||||| || || ||||| |||| ||||||||||||| ||||| || |||| ||||||||||||| |
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| T |
15779885 |
tttccttagcacttttcttctctcaacagtttcacatatcacaaagaaacatagtcaccaagggtggattttgaacaacctaaatgcttctcatcttgat |
15779984 |
T |
|
| Q |
341 |
tactactatgcgttttt |
357 |
Q |
| |
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|||||||| || ||||| |
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| T |
15779985 |
tactactacgcattttt |
15780001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 78 - 357
Target Start/End: Original strand, 15755717 - 15755996
Alignment:
| Q |
78 |
aagttcctttgagtattttcattttgcttcctcagtttatacttatgggaacagctgatgcatttttagaggttgcgaaaatcgagtttttctacgatca |
177 |
Q |
| |
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| T |
15755717 |
aagttccattaagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatca |
15755816 |
T |
|
| Q |
178 |
agctccagaaagcatgaagagtattggaacttcatattcatcaactacattaggcgttggaaatttcatcagttcattccttttgtcgacagtatcgcat |
277 |
Q |
| |
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||| |||||||||||||||||| ||||||| |||||||| | |||||| || |||| | ||| |||| | || ||| | || ||||| || ||| |
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| T |
15755817 |
agcaccagaaagcatgaagagtcttggaacatcatattccttaactactactggaattggtagttttctcagcacttttcttctctcaacagtttcacat |
15755916 |
T |
|
| Q |
278 |
ataactcaggaacatggtcataaagggtggattttaaacaatctgaatgattctcatcttgattactactatgcgttttt |
357 |
Q |
| |
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| ||| || |||||||| | |||||||||||| || || |||||| |||||||||||||||||||||||| ||||| |
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| T |
15755917 |
gtcactgagaaacatggtggtcgagggtggattttgaataacttgaatgcttctcatcttgattactactatgcattttt |
15755996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 78 - 225
Target Start/End: Original strand, 15766586 - 15766733
Alignment:
| Q |
78 |
aagttcctttgagtattttcattttgcttcctcagtttatacttatgggaacagctgatgcatttttagaggttgcgaaaatcgagtttttctacgatca |
177 |
Q |
| |
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||||||| || || || |||||||||||||| || ||||||||||||||| ||||| ||| ||||||||| ||| ||||| ||||||||||| ||||| |
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| T |
15766586 |
aagttccattaagcatattcattttgcttccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatca |
15766685 |
T |
|
| Q |
178 |
agctccagaaagcatgaagagtattggaacttcatattcatcaactac |
225 |
Q |
| |
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||| ||||||||||||||||| ||||||| ||||| |||| |||||| |
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| T |
15766686 |
agcaccagaaagcatgaagagccttggaacatcatactcattaactac |
15766733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 15766809 - 15766865
Alignment:
| Q |
301 |
agggtggattttaaacaatctgaatgattctcatcttgattactactatgcgttttt |
357 |
Q |
| |
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|||||||||||| || || |||||| |||||||||||||||||||||||| ||||| |
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| T |
15766809 |
agggtggattttgaataacttgaatgcttctcatcttgattactactatgcattttt |
15766865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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