View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1677-Insertion-12 (Length: 640)
Name: NF1677-Insertion-12
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1677-Insertion-12 |
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Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 8 - 504
Target Start/End: Original strand, 38027989 - 38028477
Alignment:
| Q |
8 |
attcacttccaaagaaaaga---ataaccaaaggtgcaatgtctctatttatccaaaaaattattttgctatgtgcgttgattttgttatcactgcacaa |
104 |
Q |
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| T |
38027989 |
attcacttccaaagaaaagattaataaccaaaggtgcaatgtctctatttatccaaaaaattattttgctatgtgcgttgattttgttatcactgcacaa |
38028088 |
T |
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| Q |
105 |
tattcatggagtacatgtgaatattcataactctttggaaggaagtttggacttaattgttcattgcaaaactatggatgatgatttcggagtccatcct |
204 |
Q |
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| T |
38028089 |
tattcatggaatacatgtgaatattcataactctttggaaggaagtttggacttaattgttcattgcaaaactatggatgatgatttcggagtccatcct |
38028188 |
T |
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| Q |
205 |
ctgcatcctggtgataactatggtttcagtttcaatgagaaagttcttttcgacagcccttgctcctttggatggaatggtgagacacatagttttaata |
304 |
Q |
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| T |
38028189 |
ctgcatcctggtgataactatggtttcagtttcaatgagaaagttcttttcgacagcccttgctcctttggatggaatggtgagacacatagttttaata |
38028288 |
T |
|
| Q |
305 |
tttaccatgccagtaatttacgtaaaagtaattgcgatgattgcaattggaatatattcaagtcaggaccatgtagaattcaacaacatggggatcctat |
404 |
Q |
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| T |
38028289 |
tttaccatgccagtaatttacgtaaaagtaattgcgatgattgcaattggaatatattcaagtcaggaccatgtagaattcaacaacatggggatcctat |
38028388 |
T |
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| Q |
405 |
atgctttccgtttgataactgataagtacaaaaaatataatacatctttttcattttaataaatattgttttcaagttgtagagaactattatcttaaat |
504 |
Q |
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| T |
38028389 |
atgctttccgtttgataactgat-----------cgataatacatctttttcattttaataaatattgttttcaaggtgtagagaactattatctcaaat |
38028477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 412
Target Start/End: Complemental strand, 30459596 - 30459517
Alignment:
| Q |
333 |
taattgcgatgattgcaattggaatatattcaagtcaggaccatgtagaattcaacaacatggggatcctatatgctttc |
412 |
Q |
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| T |
30459596 |
taattgtgattattgcaattggaatgtatttaaatcaggaccatgtagacttcaggaacatggggaccctatttgctttc |
30459517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 382
Target Start/End: Complemental strand, 30448035 - 30447986
Alignment:
| Q |
333 |
taattgcgatgattgcaattggaatatattcaagtcaggaccatgtagaa |
382 |
Q |
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| T |
30448035 |
taattgtgattattgcaattggaatgtattcgaatcaggaccatgtagaa |
30447986 |
T |
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