View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1677-Insertion-3 (Length: 435)
Name: NF1677-Insertion-3
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1677-Insertion-3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 32588374 - 32588701
Alignment:
| Q |
8 |
aattacccgtaactttgtgaagaaaataaaggtgttacgtgaattgtgtcactttcgtggaatcaaacaactaattatacctctcccatgcaaggaccac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32588374 |
aattacccgtaactttgtgaagaaaataaaggtgttacgtgaattgtgtcactttcgtggaatcaaacaactaattatacctctcccatgcaaggaccac |
32588473 |
T |
|
| Q |
108 |
cttaaaacctttaactctagtggaacctacattatcatattctgcaaacagaaaaattgatttcctttggatgatatcgcagaaaataataaaagtgtca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32588474 |
cttaaaacctttaactctagtggaacctacattatcatattctgcaaacagaaaaattgatttcctttgtatgatatcgcagaaaataataaaagtgtca |
32588573 |
T |
|
| Q |
208 |
atacaaagataacgaaaggtaggttcaataaaatggaacaattagtcaccccatcttgtcccaaccaagtcgtcttacatatgctactatatccgtttta |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32588574 |
atacaaagataacgaaaggtaggttcaataaaatggaacaattagtcaccccatcttgtcccaaccaagtcgtcttacatatgctactatatccgtttta |
32588673 |
T |
|
| Q |
308 |
aaattccctcacaaacacgcataaacat |
335 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
32588674 |
aaattccctcacaaacacgcataaacat |
32588701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University