View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1677-Insertion-4 (Length: 181)

Name: NF1677-Insertion-4
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1677-Insertion-4
NF1677-Insertion-4
[»] chr2 (6 HSPs)
chr2 (10-181)||(16220705-16220876)
chr2 (10-181)||(16211493-16211685)
chr2 (10-79)||(16215719-16215788)
chr2 (81-171)||(16215811-16215901)
chr2 (102-181)||(16207429-16207508)
chr2 (102-181)||(16226204-16226283)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 16220705 - 16220876
Alignment:
Q  10 atgcacctgtacttacgatcatcaaccatatgatattgatctatgcgatattgggatgggactctgcactagtgatgcaaagtgtacaggccaatatcct 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16220705 atgcacctgtacttacgatcatcaaccatatgatattgatctatgcgatattgggatgggactctgcactagtgatgcaaagtgtacaggccaatatcct 16220804  T
Q  110 aagtcgggtggtgggttatgtatccaacactttggtctcgactattgcagatgtacctatagacggccttga 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16220805 aagtcgggtggtgggttatgtatccaacactttggtctcgactattgcagatgtacctatagacggccttga 16220876  T

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Target: chr2; HSP #2
Raw Score: 97; E-Value: 6e-48
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 16211493 - 16211685
Alignment:
Q  10 atgcacctgtacttacgatcatcaaccatatgatattgatctatgcgatattgggatgggactctgcacta---------------------gtgatgca 88  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||                     ||||||||    
T  16211493 atgcacatgtacttacgatcatgaaccatatgatattgctctatgcgatattgggatgggactctgcactaaggattgtaggagtgattgttgtgatgca 16211592  T
Q  89 aagtgtacaggccaatatcctaagtcgggtggtgggttatgtatccaacactttggtctcgactattgcagatgtacctatagacggccttga 181  Q
    |||||||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16211593 aagtgtaccggccaatatccaaagtcgggtgttgggttatgtatccatcactttggtctcgactattgcagatgtacctatagacggccttga 16211685  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 16215719 - 16215788
Alignment:
Q  10 atgcacctgtacttacgatcatcaaccatatgatattgatctatgcgatattgggatgggactctgcact 79  Q
    |||||| |||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||    
T  16215719 atgcacttgtacttacgatcatctaccatataattttgatctatgcgatattgggatgggactctgcact 16215788  T

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Target: chr2; HSP #4
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 16215811 - 16215901
Alignment:
Q  81 gtgatgcaaagtgtacaggccaatatcctaagtcgggtggtgggttatgtatccaacactttggtctcgactattgcagatgtacctatag 171  Q
    |||| |||| |||||| |||||||||||| | ||||||| |||||||||| | | | ||||||||||| ||||||||||||||||||||||    
T  16215811 gtgaagcaaggtgtactggccaatatccttattcgggtgttgggttatgtgtgcgagactttggtctccactattgcagatgtacctatag 16215901  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 16207429 - 16207508
Alignment:
Q  102 aatatcctaagtcgggtggtgggttatgtatccaacactttggtctcgactattgcagatgtacctatagacggccttga 181  Q
    ||||||||||||| |||| |||||| ||| | ||| ||| ||||||||||||||||   |||||||||||||| ||||||    
T  16207429 aatatcctaagtcaggtgttgggttttgtgtgcaagactatggtctcgactattgctcttgtacctatagacgaccttga 16207508  T

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Target: chr2; HSP #6
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 16226204 - 16226283
Alignment:
Q  102 aatatcctaagtcgggtggtgggttatgtatccaacactttggtctcgactattgcagatgtacctatagacggccttga 181  Q
    |||||||||||||||||| |||||  ||  | ||| ||| ||||||||||||||||   |||||||| ||||||| ||||    
T  16226204 aatatcctaagtcgggtgttgggtattgcgtgcaagactatggtctcgactattgctcttgtacctacagacggcgttga 16226283  T

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