View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1677-Insertion-5 (Length: 263)
Name: NF1677-Insertion-5
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1677-Insertion-5 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 263
Target Start/End: Complemental strand, 42662175 - 42661918
Alignment:
| Q |
6 |
cagcaacatggtttggttgctatctctgtccatattttgttagctggtgggtccatacatttcattacatactcttataatcacaaagcttttccccctt |
105 |
Q |
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| T |
42662175 |
cagcaacatggtttggttgctatctctgtccatattctgttagctggtgggtccatacatttcattacatactcttgtaatcacaaagcttttccccctt |
42662076 |
T |
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| Q |
106 |
cccatacgtttagtgcgcaacgtgtaatgttacataatcaagcttataaggttttcnnnnnnnactcaatcactgaatcacaagcttataagctgaatat |
205 |
Q |
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| T |
42662075 |
cccatacgtttagtgcgcaacgtgtaatgttacataatcaagcttataaggttttctttttttactcaatcactgaatcacaagcttataagctgaatat |
42661976 |
T |
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| Q |
206 |
tgtgaaaacaattaatgcacactcattgtttcaaataataagtaaatcatagatatca |
263 |
Q |
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| T |
42661975 |
tgtgaaaacaattaatgcacactcattgtttcaaataataagtaaatcatagatatca |
42661918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 6 - 263
Target Start/End: Complemental strand, 55641816 - 55641557
Alignment:
| Q |
6 |
cagcaacatggtttggttgctatctct--gtccatattttgttagctggtgggtccatacatttcattacatactcttataatcacaaagcttttccccc |
103 |
Q |
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||||||||||||||||||||||||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55641816 |
cagcaacatggtttggttgctatctatatgtccatattctgttagctggtgtgtccatacatttcattacatactcttataatcacaaagcttttccccc |
55641717 |
T |
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| Q |
104 |
ttcccatacgtttagtgcgcaacgtgtaatgttacataatcaagcttataaggttttcnnnnnnnactcaatcactgaatcacaagcttataagctgaat |
203 |
Q |
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| T |
55641716 |
ttcccatacgtttagtgcgcaacgtgtaatgttacataatcaagcttacaaggttttctttttttactcaatcactgaatcacaagcttataagctgaat |
55641617 |
T |
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| Q |
204 |
attgtgaaaacaattaatgcacactcattgtttcaaataataagtaaatcatagatatca |
263 |
Q |
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| T |
55641616 |
attgtgaaaacaattcatgcacactaattgtttcaaataataagtaaatcatagatatca |
55641557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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