View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1677-Insertion-6 (Length: 622)
Name: NF1677-Insertion-6
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1677-Insertion-6 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 8 - 622
Target Start/End: Original strand, 234030 - 234644
Alignment:
| Q |
8 |
acgattatataggcaaggagattgataaccgtctatgtgaaatgcgacgtcatttgagaaaaccattatcaagggcttcaacgatggggatcaacttagg |
107 |
Q |
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| T |
234030 |
acgattatataggcaaggagattgataaccgtctatgtgaaatgcgacgtcatttgagaaaaccattatcaagggcttcaacgatggggatcaacttagg |
234129 |
T |
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| Q |
108 |
gtgcgcccctgtgcagtaagctgcacaggacttcgaagacttgtgattaaattttgcagcacagtctcagcctaaacatgaaatcaaatatattcgaaga |
207 |
Q |
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| T |
234130 |
gtgcgcccctgtgcagtaagccgcacaggacttcgaagacttgtgattaaattttgcagcacagtctcagcctaaacatgaaatcagatatattcgaaga |
234229 |
T |
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| Q |
208 |
ctttccttgctcaatctcagcctgggcattacccaatatcaagaacgcacctctggagtatttaaaaattaaaatatcaggcaaaaaattgttggaattc |
307 |
Q |
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| T |
234230 |
ctttccttgctcaatctcagcctgggcattacccaatatcaagaacgcacctctggaatatttaaaaattaaaatatcaggcaaaaaattgttggaattc |
234329 |
T |
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| Q |
308 |
agaaccacaccagtgtaatgagaggttatgttgtgcctctaacaaagctataatccacagttcagcaataatggtacttcaagtcaagtcaatccttaca |
407 |
Q |
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| T |
234330 |
agaaccacaccagtgtaatgagaggttatgttgtgcctctaacaaagctataatccacagttcagcaataatggtacttcaagtcaagtcaatccttaca |
234429 |
T |
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| Q |
408 |
ttctagaagtcataggtgtttgtaaaaatcaatcaattttaaaaacttcatggnnnnnnntatttattaaaacctttagctgaactcaaaatgaataaat |
507 |
Q |
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| T |
234430 |
ttctagaagtcataggtgtttgtaaaaatcaatcaattttaaaaacttcatggaaaaaaatatttattaaaacctttagctgaactcaaaatgaataaat |
234529 |
T |
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| Q |
508 |
gcaagacttgttgaaatctatggtgatttggataaagtgttgcacaccggtgtacccacgatttaatgttctaatatccaagcttcaaataaaatgaatt |
607 |
Q |
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| T |
234530 |
gcaagacttgttgaaatctatggtgatttggataaagtgttgcacaccggtgtacccacgatttaatgttctaatatccaagcttcaaataaaatgaatt |
234629 |
T |
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| Q |
608 |
agaatgatagtcaag |
622 |
Q |
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| T |
234630 |
agaatgatagtcaag |
234644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 1e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 241 - 622
Target Start/End: Complemental strand, 36419325 - 36418962
Alignment:
| Q |
241 |
caatatcaagaacgcacctctggagtatttaaaaattaaaatatcaggcaaaaaattgttggaattcagaaccacaccagtgtaatgagaggttatgttg |
340 |
Q |
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| T |
36419325 |
caatatcaagaatgcacctctggaatatttaaaaattaaaatatcaggtaagaaattgttggaattcagatccacaacaacgtaatgagaggttattctg |
36419226 |
T |
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| Q |
341 |
tgcctctaacaaagctataatccacagttcagcaataatggtacttcaagtcaagtcaatccttacattctagaagtcataggtgtttgtaaaaatcaat |
440 |
Q |
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| T |
36419225 |
tgcctctaacaaagctaaaatccccagttcagcaataattgcccttcaagtcaag---------------------tcataggtgtttgtaaaaatcaat |
36419147 |
T |
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| Q |
441 |
caattttaaaaacttcatggnnnnnnntat---ttattaaaacctttagctgaactcaaaatgaataaatgcaagacttgttgaaatctatggtgatttg |
537 |
Q |
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| T |
36419146 |
caattctaaaaacttcattgaaaaaaaaaaatctttttaaaacctttagctgaactcagaatgaataaatgcaagacttgtcgaaatctatggtgatttg |
36419047 |
T |
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| Q |
538 |
gataaagtgttgcacaccggtgtacccacgatttaatgttctaatatccaagcttcaaataaaatgaattagaatgatagtcaag |
622 |
Q |
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| T |
36419046 |
gataaaatgtcgcacaccagcgtacccacgatttaatgttctaatatccaagcttcaaataaaatgaattagaatgatagtcaag |
36418962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 185 - 239
Target Start/End: Complemental strand, 36419600 - 36419546
Alignment:
| Q |
185 |
atgaaatcaaatatattcgaagactttccttgctcaatctcagcctgggcattac |
239 |
Q |
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| T |
36419600 |
atgaaatcaaatatattcgaagactttccttgctcaatctcagcctgagcattac |
36419546 |
T |
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Back To:
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