View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1677-Insertion-9 (Length: 471)

Name: NF1677-Insertion-9
Description: NF1677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1677-Insertion-9
NF1677-Insertion-9
[»] chr3 (3 HSPs)
chr3 (8-380)||(2505876-2506249)
chr3 (330-375)||(9507380-9507425)
chr3 (330-375)||(9515355-9515400)
[»] chr4 (1 HSPs)
chr4 (93-165)||(8681912-8681984)
[»] chr5 (1 HSPs)
chr5 (92-167)||(30916398-30916473)
[»] chr8 (1 HSPs)
chr8 (105-163)||(7361274-7361332)
[»] scaffold2125 (1 HSPs)
scaffold2125 (328-380)||(999-1051)


Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 380
Target Start/End: Original strand, 2505876 - 2506249
Alignment:
Q  8 attcttaattaggcactcctactaaataagctatatatttttaactttttgttgttcttgggaaatgatttgtctggcatgaattttttctccagtgaac 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||    
T  2505876 attcttaattaggcactcctactaaataagctatatatttttaactttttgtggttcttgggaaatgatt-gtctggcatgaattttttctcctgtgaac 2505974  T
Q  108 taatttcaaccattcattcattttaatgatagctgagctcatctcaacccttcattcatta--attannnnnnnnnngacaagttcattcatcttgtatg 205  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||           ||||||||||||||||||||||    
T  2505975 taatctcaacaattcattcattttaatgatagctgagctcatctcaacccttcattcattattattattattttttttacaagttcattcatcttgtatg 2506074  T
Q  206 gtaccgtggtcaaccatcgcagagcaatcctcaaccgaaccgaagttcctcatccactacattggtttgttgtagcatgagcacaacaactgcgccatcc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2506075 gtaccgtggtcaaccatcgcagagcaatcctcaaccgaaccgaagttcctcatccactacattggtttgttgtagcatgggcacaacaactgcgccatcc 2506174  T
Q  306 ttaagctttgttcccagacaggtcaacattaaatcattacacgtttgtagtgatgttctatattttcatatccct 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2506175 ttaagctttgttcccagacaggtcaacattaaatcattacacgtttgtagtgatgttctatattttcatatccct 2506249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 9507380 - 9507425
Alignment:
Q  330 aacattaaatcattacacgtttgtagtgatgttctatattttcata 375  Q
    ||||||| ||||||||| ||||||||| |||||| |||||||||||    
T  9507380 aacattagatcattacaagtttgtagtaatgttcgatattttcata 9507425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 9515355 - 9515400
Alignment:
Q  330 aacattaaatcattacacgtttgtagtgatgttctatattttcata 375  Q
    ||||||| ||||||||| ||||||||| |||||| |||||||||||    
T  9515355 aacattagatcattacaagtttgtagtaatgttcgatattttcata 9515400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 8681912 - 8681984
Alignment:
Q  93 ttttctccagtgaactaatttcaaccattcattcattttaatgatagctgagctcatctcaacccttcattca 165  Q
    |||||||| | |||||||| |||||||||||||| ||||||||| || |||||||||||||||||| ||||||    
T  8681912 ttttctcctgcgaactaatctcaaccattcattccttttaatgacagttgagctcatctcaaccctccattca 8681984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 30916398 - 30916473
Alignment:
Q  92 tttttctccagtgaactaatttcaaccattcattcattttaatgatagctgagctcatctcaacccttcattcatt 167  Q
    ||||||||| |||| ||||| |||||||||||||  ||||||||| |||| | |||||||||||||||||||||||    
T  30916398 tttttctcctgtgagctaatctcaaccattcatttcttttaatgacagcttaactcatctcaacccttcattcatt 30916473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 7361274 - 7361332
Alignment:
Q  105 aactaatttcaaccattcattcattttaatgatagctgagctcatctcaacccttcatt 163  Q
    ||||||| |||||||||||||| ||||||||| || |||||||||||||||||||||||    
T  7361274 aactaatctcaaccattcattccttttaatgacagttgagctcatctcaacccttcatt 7361332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2125 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold2125
Description:

Target: scaffold2125; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 328 - 380
Target Start/End: Complemental strand, 1051 - 999
Alignment:
Q  328 tcaacattaaatcattacacgtttgtagtgatgttctatattttcatatccct 380  Q
    |||| |||| |||||||||  |||||| ||||||||||||| |||||||||||    
T  1051 tcaatattagatcattacaattttgtaatgatgttctatatgttcatatccct 999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University