View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16770_high_11 (Length: 247)
Name: NF16770_high_11
Description: NF16770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16770_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 28024909 - 28025144
Alignment:
| Q |
1 |
tttgtgttagtctaatacatctatcccannnnnnnnnatattgaaaatgaggtgataagataagaaaacttttacaacaaattggcatgatatacccaag |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28024909 |
tttgtgttagtctaatacatctatcccatttttttt--tattgaaaatgaggtgataagataagaaaacttttacaacaaattggcatgata--cccaag |
28025004 |
T |
|
| Q |
101 |
aaaatgaataatctattgtcttagaacttgtcaattttcgtcataatataaaatgtcataatggacggnnnnnnngtaattaagatggaataaacccatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
28025005 |
aaaatgaataatctattgtcttagaacttgtcaattttcgtcataatataaaatgtcataatgaacggaaaaaaagtaattaagatggaataaacccatc |
28025104 |
T |
|
| Q |
201 |
cttaaactatataaataaaccaaccagcccctaacctatg |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
28025105 |
cttaaactatataaataaaccaaccagcccctaacctatg |
28025144 |
T |
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