View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16770_high_13 (Length: 228)
Name: NF16770_high_13
Description: NF16770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16770_high_13 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 301222 - 301450
Alignment:
| Q |
1 |
aaacatggtgatcttgatattcccaatgatacaaagtcatcaagcatgcccaagtggaatttaggaaaagaagagnnnnnnnt-actactccattggcac |
99 |
Q |
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| T |
301222 |
aaacatggtgatcttgatattcccaatgatacaaagtcatcaagcatgcccaagtggaatttaggaaaagaagagaaaaaaaacactactccattggcac |
301321 |
T |
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| Q |
100 |
tcataattgatggaaccagtttggtctataccttggagaaagaactggagtcagaggcaatattatccttctttatatgaaatttttgtttgaaatattt |
199 |
Q |
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| T |
301322 |
tcataattgatggaaccagtttggtctataccttggagaaagaactggagtcagaggcaatattatccttctttatatgaaatttttgtttgaaatattt |
301421 |
T |
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| Q |
200 |
ttatattttggaaaactaatgcttgggtt |
228 |
Q |
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| T |
301422 |
ttatattttggaaaactaatgcttgggtt |
301450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 299064 - 299261
Alignment:
| Q |
1 |
aaacatggtgatcttgatattcccaatgatacaaagtcatcaagcatgcccaagtggaatttaggaaaagaagagnnnnnnntactactccattggcact |
100 |
Q |
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| T |
299064 |
aaacatggtgatcttgatattcccaatgacaca--gtcgtcaggcaagcccaagtggaatctaagaaaggaagaaagaaac--actactccattggcgct |
299159 |
T |
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| Q |
101 |
cataattgatggaaccagtttggtctataccttggagaaagaactggagtcagaggcaatattatccttctttatatgaaatttttgtttgaaatatttt |
200 |
Q |
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| T |
299160 |
cataattgatgaaaccagtttggtttgtatcttggagaaggagctggagtcagaggtaagattatgcctcctcatatg-aagttttgtttggaatatttt |
299258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 27465193 - 27465112
Alignment:
| Q |
89 |
tccattggcactcataattgatggaaccagtttggtctataccttggagaaagaactggagtcagaggcaatattatccttc |
170 |
Q |
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| T |
27465193 |
tccattggcactcataattgatgggaatagtttggtttatattttggagaaggaattggagtcagaggtaaaatcatccttc |
27465112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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