View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16770_high_2 (Length: 355)
Name: NF16770_high_2
Description: NF16770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16770_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 4 - 339
Target Start/End: Complemental strand, 28024711 - 28024376
Alignment:
| Q |
4 |
ggagtagcataggcctcagaggatggaaagatagtgttggaaaatactcttgacgcgcgacttgatgtcatttttcgacaaaagttgcccgaggcatgtt |
103 |
Q |
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| T |
28024711 |
ggagtagtattggcctcagaggatggaaagatagtgttggaaaatactcttgacgcgcgacttgatgtcatttttcgacaaaagttgcccgaggcatgtt |
28024612 |
T |
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| Q |
104 |
cattaccttacactcattacattgatttcaatcagaatctcaagttttaccttaattgttagtgaaaaagttaattattattgatcaaaacttatttttg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28024611 |
cattaccttacactcattacattgatttcaatcagaatctcaagttttaccttaattgttagtgaaaaagttaattattattgatcaaaacttatttttg |
28024512 |
T |
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| Q |
204 |
cacttgcagatacgaaagcgtttgttagcgtaaagttgaacaaagacggtgcaatctgaattctatattgacatctcttgtggaacttgatcatagcaaa |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28024511 |
cacttgcagatacgaaagcgtttgttagcgtaaagttgaacaaagacggtgcaatctgaattctatattgacatctcttgtggaacttgatcacagcaaa |
28024412 |
T |
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| Q |
304 |
tgacactcattttaactctatctttcattttgttat |
339 |
Q |
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||||| ||||||||||| |||||||||||||||||| |
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| T |
28024411 |
tgacaatcattttaactttatctttcattttgttat |
28024376 |
T |
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