View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16770_high_5 (Length: 329)
Name: NF16770_high_5
Description: NF16770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16770_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 25 - 315
Target Start/End: Original strand, 32146775 - 32147068
Alignment:
| Q |
25 |
cttcattggcctcaagcaaatgctcaggtaagaagaattaggaacaagcagacatcaagatcaaagaagagaacatcaagtacatgaaaaagtattaggc |
124 |
Q |
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| T |
32146775 |
cttcattggcctcaagcaaatgctcaggtaagaagaattaggaacaagcagacatcaagatcaaataacagaacatcaagtacatgaaaaagtattaggc |
32146874 |
T |
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| Q |
125 |
aaggttaaaaccaaggtatcaccatccttggttccaagttataaaatcttatcaattgttttgaaccagacatttctgcacaaaaagtattagtgcaaag |
224 |
Q |
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| T |
32146875 |
aaggttaaaaccaaggtatcaccaaccttggttccaagttataaaatctcatcaattgttttgaaccagacatttcttcacaaaaagtattagtgcaaag |
32146974 |
T |
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| Q |
225 |
---tgccatgtccaaatgacgatcgaaattgtagcattacttgtgtaaatttgaggtatcctaagggtgtgtattgtggttggtctggtctgtg |
315 |
Q |
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| T |
32146975 |
tgctgccatgtccaaatgacgatcgaaattgtagtatcacttgtgtaaatttgaggtatcctaagggtgtgtattgcggttggtctggtctgtg |
32147068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 25 - 165
Target Start/End: Original strand, 32155730 - 32155879
Alignment:
| Q |
25 |
cttcattggcctcaagcaaatgctcaggtaagaagaattaggaacaag----cagacatcaagatcaaagaagagaacatcaagtacatgaaaa----ag |
116 |
Q |
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| T |
32155730 |
cttcattggccttgagcaattgcttaggtaggaagaattaggaacaagtggacatgcatcaaggtcaaagagcagaacatcaagtacatgaaaaagtgag |
32155829 |
T |
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| Q |
117 |
tattaggcaagg-ttaaaaccaaggtatcaccatccttggttccaagtta |
165 |
Q |
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| T |
32155830 |
tattaggcaaggaaaaaaaccaaggtatcaccaactttggttccaagtta |
32155879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 42255643 - 42255712
Alignment:
| Q |
220 |
caaagtgccatgtccaaatgacgatcgaaattgtagcattacttgtgtaaatttgaggtatcctaagggtg |
290 |
Q |
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| T |
42255643 |
caaagggccatgtccaaatgacgagc-aagttgtagtgttacttgcataaatttgaggtatcttaagggtg |
42255712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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