View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16770_low_1 (Length: 888)

Name: NF16770_low_1
Description: NF16770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16770_low_1
NF16770_low_1
[»] chr7 (3 HSPs)
chr7 (12-626)||(20560330-20560948)
chr7 (618-869)||(20559494-20559745)
chr7 (692-761)||(35436293-35436362)
[»] chr2 (4 HSPs)
chr2 (688-759)||(37109024-37109095)
chr2 (709-752)||(42818853-42818896)
chr2 (706-752)||(43679922-43679968)
chr2 (706-759)||(20218627-20218680)
[»] chr5 (4 HSPs)
chr5 (706-759)||(39893354-39893407)
chr5 (716-756)||(34088032-34088072)
chr5 (704-759)||(13654587-13654642)
chr5 (706-759)||(42364226-42364279)
[»] chr4 (4 HSPs)
chr4 (706-759)||(22235341-22235394)
chr4 (706-761)||(26863188-26863243)
chr4 (688-734)||(43117921-43117967)
chr4 (687-736)||(2401069-2401118)
[»] chr3 (6 HSPs)
chr3 (690-759)||(2312986-2313055)
chr3 (690-759)||(8036542-8036611)
chr3 (690-745)||(32711271-32711326)
chr3 (706-759)||(105378-105431)
chr3 (689-738)||(29290846-29290894)
chr3 (692-733)||(54273431-54273472)
[»] chr8 (1 HSPs)
chr8 (704-752)||(27789362-27789410)
[»] chr1 (3 HSPs)
chr1 (688-740)||(21945083-21945135)
chr1 (688-759)||(20273183-20273254)
chr1 (691-736)||(35790357-35790402)
[»] scaffold0006 (1 HSPs)
scaffold0006 (706-752)||(46801-46847)
[»] scaffold0777 (1 HSPs)
scaffold0777 (695-736)||(4741-4782)
[»] chr6 (1 HSPs)
chr6 (691-736)||(7257400-7257445)


Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 12 - 626
Target Start/End: Complemental strand, 20560948 - 20560330
Alignment:
Q  12 ataatactagtgttcataatgaattacacaattttataaataagtaatagtggtacacatgtgag----gtatataatactacctcataaacaatgccct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||    
T  20560948 ataatactagtgttcataatgaattacacaattttataaataagtaatagtggtacacatgtgagtgaggtatataatactacctcataaacaatgccct 20560849  T
Q  108 aatttagaagaaccatatatccctgtctaaccttcattgctttcatcaactttgggtctagtgttcataagaacctgtacaagtaaatatcatagaataa 207  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20560848 aatttagaagaaccttatatccctgtctaaccttcattgctctcatcaactttgggtctagtgttcataagaacctgtacaagtaaatatcatagaataa 20560749  T
Q  208 attttcatttgatcaacatgatgttatataattctatagtaaatagtaagtgacaaacaatttgttaaaacatatttagttcagattatgttacctttcg 307  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20560748 attttcacttgatcaacatgatgttatataattctatagtaaatagtaagtgacaaacaatttgttaaaacatatttagttcagattatgttacctttcg 20560649  T
Q  308 gagcatggtgttctcattggtcaaagttgagatacgttcttctaaattggagttcttatcttcaaactctttagctcttgattctaagtcattcacgtac 407  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20560648 gagcatggtgttttcattggtcaaagttgagatacgttcttctaaattggagttcttatcttcaaactctttagctcttgattctaagtcattcacgtac 20560549  T
Q  408 acnnnnnnnctttcacgtgcttgttgggccgagaccctattccttagcaacctatttgtaatataagtcatttattagtttcagatagtataatctgaag 507  Q
    |        |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||    
T  20560548 agtttttttctttcacgggcttgttgggccgagaccctattccttagcaacctatttgtaatataagtcatttattagtttcaaatagtatagtctgcag 20560449  T
Q  508 ttcggccgatagatatgtaaaattggactaaaattgttctaattaagtattatgaataattcgtctttaaccgtttgagttcaataacttaattactctt 607  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||    
T  20560448 ttcggctgaaagatatgtaaaattggactaaaattgttctaattaagtattatgaatgattcttcttgaaccgtttgagttcaataacttaattactctt 20560349  T
Q  608 gaataatattttaattgca 626  Q
    |||||| ||||||||||||    
T  20560348 gaataacattttaattgca 20560330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 618 - 869
Target Start/End: Complemental strand, 20559745 - 20559494
Alignment:
Q  618 ttaattgcaatatgtatccaaatcttcttagtgacaagtttgataatttaacgtagaaattaatacaaaagtctatattatatacgaaatacatcagtta 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||    
T  20559745 ttaattgcaatatgtatccaaatcttcttagtgacaagtttgataatttaatgtagaaattaattcaaaagtctatattatatacaaaatacatcagtta 20559646  T
Q  718 ttcaatgaatttaaaaagtgattatttgtttataacagtgactatagggtgtaatgtatagttaaaatttgtgttaacttatgtcccttaccttttgaga 817  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20559645 ttcaatgaatttaaaaagtgattatttgtttataatagtgactatagggtgtaaggtatagttaaaatttgtgttaacttatgtcccttaccttttgaga 20559546  T
Q  818 cgtctatgttccttgtctgccgggtttcttccgcggcgacgctttccgggga 869  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20559545 cgtctatgttccttgtctgccgggtttcttccgcggcggcgctttccgggga 20559494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 692 - 761
Target Start/End: Original strand, 35436293 - 35436362
Alignment:
Q  692 atattatatacgaaatacatcagttattcaatgaatttaaaaagtgattatttgtttataacagtgacta 761  Q
    ||||||||||| | |||||||| ||||||||||||  ||||||||| || |||  |||||| ||||||||    
T  35436293 atattatatactagatacatcaattattcaatgaacctaaaaagtggttttttacttataatagtgacta 35436362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 688 - 759
Target Start/End: Original strand, 37109024 - 37109095
Alignment:
Q  688 gtctatattatatacgaaatacatcagttattcaatgaatttaaaaagtgattatttgtttataacagtgac 759  Q
    |||||||||||| || ||||||||||||| ||||||||||||||| | ||| | ||||||||||| ||||||    
T  37109024 gtctatattatagactaaatacatcagttcttcaatgaatttaaatattgaatttttgtttataatagtgac 37109095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 709 - 752
Target Start/End: Complemental strand, 42818896 - 42818853
Alignment:
Q  709 catcagttattcaatgaatttaaaaagtgattatttgtttataa 752  Q
    ||||| |||||||||||| ||||||||||||| |||||||||||    
T  42818896 catcaattattcaatgaacttaaaaagtgattttttgtttataa 42818853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 706 - 752
Target Start/End: Complemental strand, 43679968 - 43679922
Alignment:
Q  706 atacatcagttattcaatgaatttaaaaagtgattatttgtttataa 752  Q
    |||||||||||||||||||||| ||||||||||  | ||||||||||    
T  43679968 atacatcagttattcaatgaatctaaaaagtgaaaagttgtttataa 43679922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 706 - 759
Target Start/End: Original strand, 20218627 - 20218680
Alignment:
Q  706 atacatcagttattcaatgaatttaaaaagtgattatttgtttataacagtgac 759  Q
    |||||||| ||||||||||||| ||||||||||||  ||| |||||| ||||||    
T  20218627 atacatcaattattcaatgaatctaaaaagtgatttcttgcttataatagtgac 20218680  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 706 - 759
Target Start/End: Complemental strand, 39893407 - 39893354
Alignment:
Q  706 atacatcagttattcaatgaatttaaaaagtgattatttgtttataacagtgac 759  Q
    |||||||| |||||||||||| ||||||||||||| ||| ||||||| ||||||    
T  39893407 atacatcaattattcaatgaacttaaaaagtgattgtttatttataatagtgac 39893354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 716 - 756
Target Start/End: Complemental strand, 34088072 - 34088032
Alignment:
Q  716 tattcaatgaatttaaaaagtgattatttgtttataacagt 756  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  34088072 tatttaatgaatttaaaaagtgattttttgtttataacagt 34088032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 704 - 759
Target Start/End: Original strand, 13654587 - 13654642
Alignment:
Q  704 aaatacatcagttattcaatgaatttaaaaagtgattatttgtttataacagtgac 759  Q
    |||||||||| ||||| |||||||||||||||||| | |||| |||||| ||||||    
T  13654587 aaatacatcatttattgaatgaatttaaaaagtgaatttttgcttataatagtgac 13654642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 706 - 759
Target Start/End: Complemental strand, 42364279 - 42364226
Alignment:
Q  706 atacatcagttattcaatgaatttaaaaagtgattatttgtttataacagtgac 759  Q
    |||||| | |||||||||| ||||||||||| | | ||||||||||||||||||    
T  42364279 atacattaattattcaatgtatttaaaaagtaaatttttgtttataacagtgac 42364226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 706 - 759
Target Start/End: Original strand, 22235341 - 22235394
Alignment:
Q  706 atacatcagttattcaatgaatttaaaaagtgattatttgtttataacagtgac 759  Q
    |||||||||||||||||||||| ||||| |||||| |||| |||||| ||||||    
T  22235341 atacatcagttattcaatgaatctaaaatgtgattttttgcttataatagtgac 22235394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 761
Target Start/End: Original strand, 26863188 - 26863243
Alignment:
Q  706 atacatcagttattcaatgaatttaaaaagtgattatttgtttataacagtgacta 761  Q
    |||||||| ||||||||||||| |||| | ||| ||||||||||||| ||||||||    
T  26863188 atacatcaattattcaatgaatctaaagattgaatatttgtttataatagtgacta 26863243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 688 - 734
Target Start/End: Original strand, 43117921 - 43117967
Alignment:
Q  688 gtctatattatatacgaaatacatcagttattcaatgaatttaaaaa 734  Q
    ||||||||| ||||| |||||||||| ||||||||||||| ||||||    
T  43117921 gtctatattttataccaaatacatcaattattcaatgaatgtaaaaa 43117967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 736
Target Start/End: Complemental strand, 2401118 - 2401069
Alignment:
Q  687 agtctatattatatacgaaatacatcagttattcaatgaatttaaaaagt 736  Q
    ||||||||||||  || |||||||||| ||||| ||||||||||||||||    
T  2401118 agtctatattattgaccaaatacatcatttattgaatgaatttaaaaagt 2401069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 690 - 759
Target Start/End: Original strand, 2312986 - 2313055
Alignment:
Q  690 ctatattatatacgaaatacatcagttattcaatgaatttaaaaagtgattatttgtttataacagtgac 759  Q
    ||||||||||||  | |||||||| ||||||||||||||| |||| ||| |||||| |||||| ||||||    
T  2312986 ctatattatatatcagatacatcaattattcaatgaatttgaaaaatgaatatttgattataatagtgac 2313055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 690 - 759
Target Start/End: Complemental strand, 8036611 - 8036542
Alignment:
Q  690 ctatattatatacgaaatacatcagttattcaatgaatttaaaaagtgattatttgtttataacagtgac 759  Q
    |||||||||| || |||||||||||||||||||||||  |||||| | | |||||| |||||| ||||||    
T  8036611 ctatattataaactaaatacatcagttattcaatgaacctaaaaaataaatatttgcttataatagtgac 8036542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 690 - 745
Target Start/End: Original strand, 32711271 - 32711326
Alignment:
Q  690 ctatattatatacgaaatacatcagttattcaatgaatttaaaaagtgattatttg 745  Q
    |||||||||| || | |||||||| ||||||||||||| |||||||||||| ||||    
T  32711271 ctatattatagaccagatacatcaattattcaatgaatctaaaaagtgattttttg 32711326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 706 - 759
Target Start/End: Complemental strand, 105431 - 105378
Alignment:
Q  706 atacatcagttattcaatgaatttaaaaagtgattatttgtttataacagtgac 759  Q
    |||||||| ||||||||||||| |||||||||| | |||||||| || ||||||    
T  105431 atacatcatttattcaatgaatctaaaaagtgaatttttgtttacaatagtgac 105378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 689 - 738
Target Start/End: Original strand, 29290846 - 29290894
Alignment:
Q  689 tctatattatatacgaaatacatcagttattcaatgaatttaaaaagtga 738  Q
    ||||||||||| || |||||||| |||||||||||||| |||||||||||    
T  29290846 tctatattatagactaaatacataagttattcaatgaa-ttaaaaagtga 29290894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 692 - 733
Target Start/End: Complemental strand, 54273472 - 54273431
Alignment:
Q  692 atattatatacgaaatacatcagttattcaatgaatttaaaa 733  Q
    ||||||||||| |||||||||| |||||||||||| ||||||    
T  54273472 atattatataccaaatacatcatttattcaatgaacttaaaa 54273431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 704 - 752
Target Start/End: Original strand, 27789362 - 27789410
Alignment:
Q  704 aaatacatcagttattcaatgaatttaaaaagtgattatttgtttataa 752  Q
    |||||||||||||||||||||||| ||| |||| ||| |||||||||||    
T  27789362 aaatacatcagttattcaatgaatgtaacaagttattttttgtttataa 27789410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 740
Target Start/End: Complemental strand, 21945135 - 21945083
Alignment:
Q  688 gtctatattatatacgaaatacatcagttattcaatgaatttaaaaagtgatt 740  Q
    ||||||| ||||||| |||||||| || |||||||||||| ||||||||||||    
T  21945135 gtctataatatataccaaatacattaggtattcaatgaatctaaaaagtgatt 21945083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 759
Target Start/End: Original strand, 20273183 - 20273254
Alignment:
Q  688 gtctatattatatacgaaatacatcagttattcaatgaatttaaaaagtgattatttgtttataacagtgac 759  Q
    |||||||||||| ||   |||||||| |||||||||||||| |||||||  || |||| |||||||||||||    
T  20273183 gtctatattatagactggatacatcatttattcaatgaattaaaaaagttgttttttgcttataacagtgac 20273254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 736
Target Start/End: Complemental strand, 35790402 - 35790357
Alignment:
Q  691 tatattatatacgaaatacatcagttattcaatgaatttaaaaagt 736  Q
    ||||| |||||  |||||||||| ||||||||||||||||||||||    
T  35790402 tatatcatatatcaaatacatcaattattcaatgaatttaaaaagt 35790357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 706 - 752
Target Start/End: Original strand, 46801 - 46847
Alignment:
Q  706 atacatcagttattcaatgaatttaaaaagtgattatttgtttataa 752  Q
    |||||||||||||||||| ||| |||||||| ||| |||||||||||    
T  46801 atacatcagttattcaatcaatctaaaaagttattttttgtttataa 46847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 695 - 736
Target Start/End: Complemental strand, 4782 - 4741
Alignment:
Q  695 ttatatacgaaatacatcagttattcaatgaatttaaaaagt 736  Q
    |||||||  |||||||| ||||||||||||||||||||||||    
T  4782 ttatatatcaaatacattagttattcaatgaatttaaaaagt 4741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 736
Target Start/End: Original strand, 7257400 - 7257445
Alignment:
Q  691 tatattatatacgaaatacatcagttattcaatgaatttaaaaagt 736  Q
    |||||||||||  |||||||| | ||||||||||||||||||||||    
T  7257400 tatattatatatcaaatacattaattattcaatgaatttaaaaagt 7257445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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