View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16770_low_10 (Length: 293)
Name: NF16770_low_10
Description: NF16770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16770_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 96 - 283
Target Start/End: Original strand, 29925739 - 29925927
Alignment:
| Q |
96 |
gtgaaaatgattaaaaatctggatagacatacttgacagaaataatcttactgacattcaaaaaagacactagagtagtgtacatgcttcaacagtctta |
195 |
Q |
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| T |
29925739 |
gtgaaaatgattaaaaatctggatagacatattagacagaaataatcttactgacattcaaaaaagacactagagtagtgtacatgcttcaacagtctta |
29925838 |
T |
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| Q |
196 |
ataaatagcatgtcttttgcattactctttcgcattacatggca-tttcctacattattatgtttaggcaatgttcatctgtgcctttg |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29925839 |
ataaatagcatgtcttttgcattactctttcgcattacatggtattttcctacattactatgtttaggcaatgttcatctgtgcctttg |
29925927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 107 - 202
Target Start/End: Original strand, 28279735 - 28279831
Alignment:
| Q |
107 |
taaaaatctggatagacatacttgacagaaataatcttactgacattc-aaaaaagacactagagtagtgtacatgcttcaacagtcttaataaata |
202 |
Q |
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| T |
28279735 |
taaaaatctggatagacatatttgacagaaataatcttactgacattcaaaaaaagacgctagggtagcatacatgcttcaccagtcttaataaata |
28279831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 29925622 - 29925664
Alignment:
| Q |
55 |
caaccttttctttctgttcagtaaatccatctatttaactagt |
97 |
Q |
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| T |
29925622 |
caaccttttctttctgttcagtaaatccatctatttaactagt |
29925664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 28279596 - 28279631
Alignment:
| Q |
59 |
cttttctttctgttcagtaaatccatctatttaact |
94 |
Q |
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|||||||||||||| ||||||||||||||||||||| |
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| T |
28279596 |
cttttctttctgtttagtaaatccatctatttaact |
28279631 |
T |
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