View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16770_low_16 (Length: 235)
Name: NF16770_low_16
Description: NF16770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16770_low_16 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34785321 - 34785100
Alignment:
| Q |
1 |
aacaagtttgagaaattaatttccaacaggaaacaataaacactattaatttgactcttcgaaaagaaacttattgaattcatagttcataacttgattg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34785321 |
aacaagtttgagaaattaatttccaacaggaaacaataaacactattaatttgactctccgaaaagaaacttattgaattcatagttcataacttgattt |
34785222 |
T |
|
| Q |
101 |
ttgcaacttgaaattaaggataaacttcaacgagagacttgaagccagaaatgggggtaattttgtagctgctgaaacctgcttcgtaaataagtgtatc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || || ||| | || |
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| T |
34785221 |
ttgcaacttgaaattaaggataaacttcaacgagagacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttc |
34785122 |
T |
|
| Q |
201 |
ccattctttctttgttctttct |
222 |
Q |
| |
|
|||||||| ||||||||||||| |
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|
| T |
34785121 |
ccattcttgctttgttctttct |
34785100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 34777040 - 34776934
Alignment:
| Q |
116 |
aaggataaacttcaacgagagacttgaagccagaaatgggggtaattttgtagctgctgaaacctgcttcgtaaataagtgtatcccattctttctttgt |
215 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| |||||||| || || || ||| | |||||||||| |||||| |
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|
| T |
34777040 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgt |
34776941 |
T |
|
| Q |
216 |
tctttct |
222 |
Q |
| |
|
||||||| |
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|
| T |
34776940 |
tctttct |
34776934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 222
Target Start/End: Original strand, 11467266 - 11467376
Alignment:
| Q |
112 |
aattaaggataaacttcaacgagagacttgaagccagaaatgggggtaattttgtagctgctgaaacctgcttcgtaaataagtgtatcccattctttct |
211 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| | || || ||||| |||||||| ||||||||||| || || || ||| | | ||||||||||| |
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|
| T |
11467266 |
aattaaggataaacttctataagagacttgaagccacatattggagtaatcttgtagctactgaaacctgcatcatatatgagtttcttccattctttct |
11467365 |
T |
|
| Q |
212 |
ttgttctttct |
222 |
Q |
| |
|
|| ||||||| |
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|
| T |
11467366 |
tttctctttct |
11467376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 11524607 - 11524497
Alignment:
| Q |
112 |
aattaaggataaacttcaacgagagacttgaagccagaaatgggggtaattttgtagctgctgaaacctgcttcgtaaataagtgtatcccattctttct |
211 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| | || || ||||| |||||||||||||| || || || || || ||| | | ||||||||||| |
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|
| T |
11524607 |
aattaaggataaacttctataagagacttgaagccacatattggagtaatcttgtagctgctgaagccagcgtcatagatgagtttcttccattctttct |
11524508 |
T |
|
| Q |
212 |
ttgttctttct |
222 |
Q |
| |
|
|| ||||||| |
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|
| T |
11524507 |
tttctctttct |
11524497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 11444373 - 11444474
Alignment:
| Q |
111 |
aaattaaggataaacttcaacgagagacttgaagccagaaatgggggtaattttgtagctgctgaaacctgcttcgtaaataagtgtatcccattctttc |
210 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||| | || || ||||| || ||||||||||| ||||| ||| |||||| | |||||||||||| |
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|
| T |
11444373 |
aaattaaggataaacttcgatgatagacttgaagccgcatataggagtaatcttatagctgctgaagcctgcgtcgagtataagtttctcccattctttc |
11444472 |
T |
|
| Q |
211 |
tt |
212 |
Q |
| |
|
|| |
|
|
| T |
11444473 |
tt |
11444474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 212
Target Start/End: Complemental strand, 11548735 - 11548634
Alignment:
| Q |
111 |
aaattaaggataaacttcaacgagagacttgaagccagaaatgggggtaattttgtagctgctgaaacctgcttcgtaaataagtgtatcccattctttc |
210 |
Q |
| |
|
|||||||||||||||||| | || |||||||||||| | || || ||||| || ||||||||||| ||||| ||| |||||| | |||||||||||| |
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|
| T |
11548735 |
aaattaaggataaacttcgatgatagacttgaagccgcatataggagtaatcttatagctgctgaagcctgcgtcgagtataagtttctcccattctttc |
11548636 |
T |
|
| Q |
211 |
tt |
212 |
Q |
| |
|
|| |
|
|
| T |
11548635 |
tt |
11548634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 11487934 - 11487823
Alignment:
| Q |
111 |
aaattaaggataaacttcaacgagagacttgaagccagaaatgggggtaattttgtagctgctgaaacctgcttcgtaaataagtgtatcccattctttc |
210 |
Q |
| |
|
|||||| ||||||||||| | ||| |||||||||||| | || || ||||| |||||||||||||| || || || || || ||| | | |||||||||| |
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|
| T |
11487934 |
aaattagggataaacttctatgagtgacttgaagccacatattggagtaatcttgtagctgctgaagccagcgtcatagatgagtttcttccattctttc |
11487835 |
T |
|
| Q |
211 |
tttgttctttct |
222 |
Q |
| |
|
||| ||||||| |
|
|
| T |
11487834 |
ttttctctttct |
11487823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 11508399 - 11508292
Alignment:
| Q |
105 |
aacttgaaattaaggataaacttcaacgagagacttgaagccagaaatgggggtaattttgtagctgctgaaacctgcttcgtaaataagtgtatcccat |
204 |
Q |
| |
|
||||| |||||| ||||| ||||| | |||||||||||| || | || || ||||| || ||||||||||||||||| ||| | || ||| | |||||| |
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|
| T |
11508399 |
aacttaaaattatggatatacttcgatgagagacttgaaaccgcatataggtgtaatcttatagctgctgaaacctgcgtcgaatatgagtttctcccat |
11508300 |
T |
|
| Q |
205 |
tctttctt |
212 |
Q |
| |
|
|||||||| |
|
|
| T |
11508299 |
tctttctt |
11508292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 11441497 - 11441598
Alignment:
| Q |
111 |
aaattaaggataaacttcaacgagagacttgaagccagaaatgggggtaattttgtagctgctgaaacctgcttcgtaaataagtgtatcccattctttc |
210 |
Q |
| |
|
|||||||||||||||||| | || ||| |||||||| | || || ||||| || ||||||||||| ||||| ||| | || ||| | |||||||||||| |
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|
| T |
11441497 |
aaattaaggataaacttcgatgatagatttgaagccgcatataggtgtaatcttatagctgctgaagcctgcgtcgaatatgagtttctcccattctttc |
11441596 |
T |
|
| Q |
211 |
tt |
212 |
Q |
| |
|
|| |
|
|
| T |
11441597 |
tt |
11441598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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