View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16770_low_2 (Length: 568)
Name: NF16770_low_2
Description: NF16770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16770_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 21 - 552
Target Start/End: Complemental strand, 45440948 - 45440413
Alignment:
| Q |
21 |
gaggggaagtttctttgtcatttat----aactagccatggatattgattttcattcatttttattgtcttccttcatcaagagtacaaagcaatttgag |
116 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45440948 |
gaggggaagtttctttgtcatttatttatagctagccatggatattgattttcattaatttttattgtcttccttcatcaagagtacaaagcaatttgag |
45440849 |
T |
|
| Q |
117 |
cttgactatagagataaaggaaggccaggacttggaatccagagatccgtgaaaaactttcagctcactttagaggtatcatcattgaagccgggagtgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45440848 |
cttgactatagagataaaggaaggccaggacttggaatccagagatccgtgaaaaactttcagctcactttagaggtatcatcattgaagccgggagtgt |
45440749 |
T |
|
| Q |
217 |
tttttatgttataataacgcagttagttatgttctctacttagcttatttgtgtttgctatgattaggagaatgggaagcagacaatcctgcagctaggg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45440748 |
tttttatgttataataacgcagttagttatgttgtctacttagctgatttgtgtttgctatgattaggagaatgggaagcagacaatcctgcagctaggg |
45440649 |
T |
|
| Q |
317 |
agggtaggaaaatctaattttgttatggactacaggtatcaattcaaaattttcttgttttattgaccttaatgttttttgacgatgcggggtttcatag |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45440648 |
agggtaggaaaatctaattttgttatggactacaggtatcaattcaaaattttcttgttttattgaccttaatgttttttgaggatgcggggtttcatag |
45440549 |
T |
|
| Q |
417 |
ctagtaccatttcctctgtcaatctgcagatatcctttgactggttaccaggcgttttgcatatgtttggcttccattgatgcaaagctttgttgcatag |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45440548 |
ctagtaccatttcctctgtcaatctgcagatatcctttgactggttaccaggcgttttgcatatgtttggcttccattgatgcaaagctttgttgcatag |
45440449 |
T |
|
| Q |
517 |
tgtagcggcaaatctctctgttcccaccattggttc |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
45440448 |
tgtagcggcaaatctctctgttcccaccattggttc |
45440413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University