View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16770_low_3 (Length: 455)
Name: NF16770_low_3
Description: NF16770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16770_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 166 - 438
Target Start/End: Complemental strand, 32629186 - 32628910
Alignment:
| Q |
166 |
gtatgagctctacatcaaaagtattctgaaagaaagatagaagaaacaggtatatatggaagtagcgaaggtactacacatgaatggaggcgttggagaa |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32629186 |
gtatgagctctacatcaaaagtattctgaaagaaagatagaagaaacaggtatatatggaagtagctaaggtactacacatgaatggaggcgttggagaa |
32629087 |
T |
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| Q |
266 |
accagctatgcaaacaactccttagttcaggtattttata----cataactttgtaagagaaatgtttggatcatatacattaatatattgatgacacat |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
32629086 |
accagctatgcaaacaactccttagttcaggtattttatacatacataactttgtaagagaaatgtttggatcacatatattaatatattgatgacacat |
32628987 |
T |
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| Q |
362 |
cgttttttggttgaggtaaataagaatttgaaatgacaactacatattcatcaataaaagatagtagaattattcat |
438 |
Q |
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| T |
32628986 |
cgtttcttggttgaggtaaataagaatttgacatgacaactacatattcatcaataaaagatagtagaattattcat |
32628910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 25 - 142
Target Start/End: Complemental strand, 32629346 - 32629229
Alignment:
| Q |
25 |
tgaaaatgttgaatgcaaagttttcttaggcgtgtgaacatattttaaaataagtgacggctaatattttttagtaagctttcacatgatcatcacatgt |
124 |
Q |
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| T |
32629346 |
tgaaaatgttgaatgcaaagttttcttaggcgtgtgaacatattttaaaataagtaacggctaatattttttagtaagctttcacatgatcatcacatgt |
32629247 |
T |
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| Q |
125 |
acgtgcgatgcttctata |
142 |
Q |
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| T |
32629246 |
acgtgcgatgcttctata |
32629229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 32710169 - 32710112
Alignment:
| Q |
242 |
cacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggtat |
299 |
Q |
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| T |
32710169 |
cacatgaatggaggtgttggagaagcaagctatgcaaacaactccttagttcaggtat |
32710112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 221 - 297
Target Start/End: Complemental strand, 32705244 - 32705168
Alignment:
| Q |
221 |
atggaagtagcgaaggtactacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggt |
297 |
Q |
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|||||| |||| ||||| ||||||||||||||||||| |||||| | || |||||| | ||||||||| ||||||| |
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| T |
32705244 |
atggaattagcaaaggtgctacacatgaatggaggcgctggagatgcaagttatgcagataactccttacttcaggt |
32705168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 305
Target Start/End: Complemental strand, 27737678 - 27737613
Alignment:
| Q |
240 |
tacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggtattttata |
305 |
Q |
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| T |
27737678 |
tacacatgaatggaagccttgcagaagcaagctatgcaaacaactccttacttcaggtatattata |
27737613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 221 - 300
Target Start/End: Complemental strand, 5812248 - 5812169
Alignment:
| Q |
221 |
atggaagtagcgaaggtactacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggtatt |
300 |
Q |
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||||||||||| | ||||||| |||||||||| | |||| |||| | |||||||||||||||||||| |||||||||| |
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| T |
5812248 |
atggaagtagctcaagtactacccatgaatggaagtgttgaagaagcaagctatgcaaacaactccttgcttcaggtatt |
5812169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 298
Target Start/End: Original strand, 8028711 - 8028773
Alignment:
| Q |
236 |
gtactacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggta |
298 |
Q |
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||||| |||||||||||||| |||||||||| |||||| |||| ||||||||| |||||||| |
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| T |
8028711 |
gtactccacatgaatggaggaattggagaaacaagctattcaaataactccttacttcaggta |
8028773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 297
Target Start/End: Complemental strand, 21945124 - 21945064
Alignment:
| Q |
237 |
tactacacatgaatggaggcgttggagaaaccagctatgcaaacaactccttagttcaggt |
297 |
Q |
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|||||||||||||||||||||| | ||| | ||||||||||||||||||| | ||||||| |
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| T |
21945124 |
tactacacatgaatggaggcgtcgatgaagcaagctatgcaaacaactcctcacttcaggt |
21945064 |
T |
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