View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16770_low_4 (Length: 393)

Name: NF16770_low_4
Description: NF16770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16770_low_4
NF16770_low_4
[»] chr7 (29 HSPs)
chr7 (11-375)||(24609819-24610183)
chr7 (48-127)||(11344027-11344106)
chr7 (48-127)||(48930925-48931004)
chr7 (48-127)||(35133165-35133244)
chr7 (48-124)||(28476444-28476520)
chr7 (48-127)||(25068275-25068354)
chr7 (66-123)||(38880422-38880479)
chr7 (48-131)||(3876042-3876125)
chr7 (63-127)||(4999823-4999887)
chr7 (55-126)||(25255452-25255521)
chr7 (75-127)||(31481892-31481944)
chr7 (92-131)||(3222906-3222945)
chr7 (57-127)||(38439934-38440004)
chr7 (73-126)||(11654043-11654096)
chr7 (58-127)||(24069195-24069264)
chr7 (57-126)||(46822538-46822607)
chr7 (95-130)||(37890165-37890200)
chr7 (94-137)||(40741822-40741865)
chr7 (91-137)||(2407850-2407896)
chr7 (96-126)||(8169279-8169309)
chr7 (87-137)||(25286983-25287033)
chr7 (85-131)||(26017332-26017377)
chr7 (94-131)||(10574789-10574826)
chr7 (94-131)||(14733741-14733778)
chr7 (86-131)||(30992498-30992542)
chr7 (54-127)||(46821546-46821619)
chr7 (95-131)||(32312925-32312961)
chr7 (95-131)||(34893511-34893547)
chr7 (94-130)||(35261553-35261589)
[»] chr8 (38 HSPs)
chr8 (48-132)||(14585895-14585979)
chr8 (63-127)||(18890491-18890555)
chr8 (57-124)||(8868035-8868102)
chr8 (48-127)||(42046439-42046518)
chr8 (64-137)||(19443846-19443919)
chr8 (63-127)||(34610069-34610133)
chr8 (48-131)||(26468938-26469021)
chr8 (48-127)||(43833788-43833867)
chr8 (48-126)||(41896735-41896812)
chr8 (96-137)||(34680666-34680707)
chr8 (109-152)||(11267286-11267330)
chr8 (63-127)||(18846261-18846325)
chr8 (85-131)||(8054482-8054527)
chr8 (92-154)||(15344560-15344617)
chr8 (92-154)||(15433625-15433682)
chr8 (92-154)||(15524929-15524986)
chr8 (90-127)||(40618876-40618913)
chr8 (82-126)||(470951-470995)
chr8 (87-127)||(3673687-3673727)
chr8 (92-131)||(1236497-1236536)
chr8 (94-137)||(12654326-12654369)
chr8 (90-137)||(16247017-16247064)
chr8 (90-137)||(27498159-27498206)
chr8 (85-131)||(5457466-5457511)
chr8 (85-126)||(589029-589069)
chr8 (85-126)||(624853-624893)
chr8 (90-131)||(6314913-6314954)
chr8 (94-131)||(9799685-9799722)
chr8 (90-127)||(28086615-28086652)
chr8 (94-131)||(30568120-30568157)
chr8 (95-131)||(7579523-7579559)
chr8 (94-126)||(21238040-21238072)
chr8 (95-131)||(28296783-28296819)
chr8 (95-131)||(31712748-31712784)
chr8 (63-131)||(31720643-31720711)
chr8 (87-127)||(40211103-40211143)
chr8 (99-143)||(40490202-40490246)
chr8 (87-127)||(41684619-41684659)
[»] chr4 (30 HSPs)
chr4 (49-127)||(33332384-33332462)
chr4 (48-131)||(6155010-6155093)
chr4 (56-137)||(36161955-36162036)
chr4 (57-137)||(43853688-43853768)
chr4 (49-116)||(7393435-7393502)
chr4 (48-137)||(27652179-27652268)
chr4 (63-127)||(18936033-18936097)
chr4 (63-127)||(36194959-36195023)
chr4 (56-136)||(52933734-52933814)
chr4 (48-127)||(1621305-1621384)
chr4 (63-127)||(37465724-37465788)
chr4 (54-127)||(42032323-42032396)
chr4 (48-116)||(48350999-48351067)
chr4 (49-131)||(31891073-31891159)
chr4 (86-131)||(46716568-46716612)
chr4 (95-127)||(28857672-28857704)
chr4 (86-137)||(12493595-12493646)
chr4 (96-131)||(35395465-35395500)
chr4 (86-131)||(9549828-9549872)
chr4 (50-131)||(9714148-9714228)
chr4 (90-131)||(13634382-13634423)
chr4 (86-127)||(14542190-14542230)
chr4 (86-131)||(44374949-44374993)
chr4 (92-137)||(51888007-51888052)
chr4 (102-131)||(52555425-52555454)
chr4 (95-131)||(24100558-24100594)
chr4 (96-128)||(38545830-38545862)
chr4 (95-131)||(38943817-38943853)
chr4 (87-127)||(52979008-52979048)
chr4 (95-131)||(56236491-56236527)
[»] chr5 (23 HSPs)
chr5 (48-152)||(2979081-2979179)
chr5 (63-131)||(35920786-35920854)
chr5 (48-127)||(14211442-14211521)
chr5 (48-126)||(19103262-19103340)
chr5 (48-137)||(28540690-28540779)
chr5 (75-137)||(16758781-16758843)
chr5 (48-126)||(24874744-24874822)
chr5 (63-125)||(39567500-39567562)
chr5 (48-131)||(19121127-19121210)
chr5 (94-131)||(15710947-15710984)
chr5 (96-137)||(36057106-36057147)
chr5 (91-131)||(8088014-8088054)
chr5 (96-131)||(28423710-28423745)
chr5 (95-138)||(33486236-33486279)
chr5 (103-137)||(12628188-12628222)
chr5 (86-131)||(5378698-5378742)
chr5 (94-127)||(8984794-8984827)
chr5 (98-131)||(26905309-26905342)
chr5 (102-131)||(34866843-34866872)
chr5 (95-131)||(17218127-17218163)
chr5 (87-127)||(24229589-24229629)
chr5 (95-131)||(40775165-40775201)
chr5 (86-130)||(41358430-41358473)
[»] chr3 (44 HSPs)
chr3 (63-131)||(16235656-16235724)
chr3 (48-131)||(53508437-53508520)
chr3 (50-127)||(41818432-41818509)
chr3 (48-124)||(42460964-42461040)
chr3 (48-127)||(21289608-21289687)
chr3 (63-127)||(8914942-8915006)
chr3 (63-127)||(27706020-27706084)
chr3 (63-127)||(51923957-51924021)
chr3 (48-119)||(27856380-27856451)
chr3 (92-131)||(50194137-50194176)
chr3 (49-120)||(38142741-38142814)
chr3 (63-131)||(3085092-3085160)
chr3 (63-127)||(7546846-7546910)
chr3 (48-127)||(51487297-51487381)
chr3 (83-126)||(14859734-14859777)
chr3 (57-131)||(52115807-52115881)
chr3 (94-131)||(628725-628762)
chr3 (96-137)||(4822057-4822098)
chr3 (94-131)||(32881160-32881197)
chr3 (91-131)||(20464766-20464806)
chr3 (95-131)||(35501443-35501479)
chr3 (104-143)||(25460776-25460815)
chr3 (94-137)||(35175653-35175696)
chr3 (64-126)||(1650176-1650238)
chr3 (87-137)||(36910561-36910611)
chr3 (90-127)||(9797339-9797376)
chr3 (94-131)||(17238058-17238095)
chr3 (94-131)||(20252059-20252096)
chr3 (90-131)||(21533610-21533651)
chr3 (90-127)||(46304326-46304363)
chr3 (90-131)||(47041849-47041890)
chr3 (90-131)||(48650535-48650576)
chr3 (74-127)||(55061754-55061807)
chr3 (87-127)||(7448719-7448759)
chr3 (87-127)||(7456861-7456901)
chr3 (96-128)||(7658422-7658454)
chr3 (95-127)||(10977647-10977679)
chr3 (99-127)||(11225762-11225790)
chr3 (95-131)||(25939170-25939206)
chr3 (74-118)||(26715936-26715980)
chr3 (95-131)||(33076689-33076725)
chr3 (95-131)||(36540371-36540407)
chr3 (95-131)||(36623931-36623967)
chr3 (95-131)||(48652117-48652153)
[»] scaffold0021 (1 HSPs)
scaffold0021 (56-131)||(4370-4445)
[»] chr6 (22 HSPs)
chr6 (48-131)||(30776880-30776963)
chr6 (48-127)||(8102943-8103022)
chr6 (58-126)||(14802055-14802123)
chr6 (48-131)||(679325-679408)
chr6 (49-127)||(1523621-1523699)
chr6 (63-131)||(31851682-31851750)
chr6 (70-127)||(22571628-22571685)
chr6 (48-120)||(546248-546320)
chr6 (75-131)||(10084942-10084998)
chr6 (90-137)||(32060124-32060171)
chr6 (96-137)||(1450531-1450572)
chr6 (57-126)||(9380249-9380318)
chr6 (90-126)||(29744483-29744519)
chr6 (92-127)||(31297069-31297104)
chr6 (48-110)||(6957358-6957420)
chr6 (85-127)||(20845408-20845449)
chr6 (91-137)||(34185489-34185535)
chr6 (90-131)||(606452-606493)
chr6 (90-127)||(14174876-14174913)
chr6 (90-127)||(14179412-14179449)
chr6 (12-52)||(6957228-6957268)
chr6 (95-131)||(14731030-14731066)
[»] chr2 (35 HSPs)
chr2 (48-127)||(10237011-10237090)
chr2 (48-131)||(14955755-14955838)
chr2 (48-126)||(3309171-3309249)
chr2 (63-127)||(19595694-19595758)
chr2 (48-131)||(14416381-14416464)
chr2 (57-124)||(16376216-16376283)
chr2 (57-127)||(6358676-6358746)
chr2 (63-120)||(3460527-3460584)
chr2 (63-127)||(3465576-3465640)
chr2 (92-131)||(32448419-32448458)
chr2 (63-137)||(12553965-12554039)
chr2 (56-122)||(18107550-18107616)
chr2 (57-131)||(19598074-19598148)
chr2 (48-126)||(34128480-34128558)
chr2 (92-137)||(17248944-17248989)
chr2 (59-127)||(32519026-32519096)
chr2 (92-127)||(37994542-37994577)
chr2 (85-127)||(5754698-5754739)
chr2 (87-137)||(30399825-30399875)
chr2 (90-131)||(1415814-1415855)
chr2 (90-131)||(1421932-1421973)
chr2 (94-131)||(11550340-11550377)
chr2 (86-131)||(11931268-11931312)
chr2 (96-137)||(24461702-24461743)
chr2 (94-131)||(30923259-30923296)
chr2 (62-127)||(32092140-32092205)
chr2 (94-131)||(32197536-32197573)
chr2 (94-127)||(37884056-37884089)
chr2 (95-131)||(4878408-4878444)
chr2 (95-131)||(12366272-12366308)
chr2 (95-131)||(15920278-15920314)
chr2 (95-127)||(18089076-18089108)
chr2 (95-131)||(18141155-18141191)
chr2 (95-127)||(26491705-26491737)
chr2 (48-127)||(28871585-28871662)
[»] chr1 (31 HSPs)
chr1 (49-127)||(48750405-48750483)
chr1 (92-143)||(19061160-19061211)
chr1 (48-127)||(36775504-36775583)
chr1 (60-131)||(31692257-31692328)
chr1 (74-127)||(16162074-16162127)
chr1 (58-152)||(34479643-34479735)
chr1 (64-127)||(40163235-40163298)
chr1 (90-137)||(44915889-44915936)
chr1 (57-128)||(50616468-50616539)
chr1 (57-128)||(50624295-50624366)
chr1 (48-122)||(13075455-13075529)
chr1 (49-127)||(41994684-41994762)
chr1 (90-127)||(39888432-39888469)
chr1 (95-131)||(11121380-11121416)
chr1 (95-131)||(13969314-13969350)
chr1 (95-131)||(30853621-30853657)
chr1 (87-127)||(50377570-50377610)
chr1 (92-131)||(24583201-24583240)
chr1 (92-131)||(24583397-24583436)
chr1 (55-137)||(45789766-45789846)
chr1 (92-127)||(47133154-47133189)
chr1 (56-125)||(25564225-25564294)
chr1 (90-127)||(26535586-26535623)
chr1 (94-131)||(38646987-38647024)
chr1 (94-131)||(49648660-49648697)
chr1 (86-131)||(49652231-49652275)
chr1 (95-131)||(8893696-8893732)
chr1 (95-131)||(12967407-12967443)
chr1 (95-131)||(26771510-26771546)
chr1 (95-131)||(34659315-34659351)
chr1 (95-131)||(46589552-46589588)
[»] scaffold0039 (2 HSPs)
scaffold0039 (64-137)||(93338-93411)
scaffold0039 (94-127)||(53206-53239)
[»] scaffold0888 (1 HSPs)
scaffold0888 (48-127)||(1472-1551)
[»] scaffold0015 (1 HSPs)
scaffold0015 (55-127)||(3839-3911)
[»] scaffold0121 (1 HSPs)
scaffold0121 (90-137)||(31069-31116)
[»] scaffold0042 (1 HSPs)
scaffold0042 (96-137)||(92292-92333)
[»] scaffold0157 (1 HSPs)
scaffold0157 (86-137)||(26831-26882)
[»] scaffold0012 (1 HSPs)
scaffold0012 (97-131)||(245035-245069)
[»] scaffold0209 (1 HSPs)
scaffold0209 (85-126)||(30290-30330)
[»] scaffold0146 (1 HSPs)
scaffold0146 (94-131)||(16104-16141)
[»] scaffold0064 (1 HSPs)
scaffold0064 (49-113)||(18891-18955)


Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 375
Target Start/End: Complemental strand, 24610183 - 24609819
Alignment:
Q  11 cacagattcaatcaatgatttgggcttcaacgttgttgattcaacctttacatttttagcgatattgatcatattat----tatatctgatgtattatat 106  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||  |||| || |||||| ||||||||||    |||| ||||||||||||||    
T  24610183 cacagattcaatcaatgatttgggtttcaacgttgttgattcaacctttatgttttcagtgatatt-atcatattatatattatacctgatgtattatat 24610085  T
Q  107 caatttgaatgaatgaatatcatttcattttatttttgtcaaaaaa--tattaactttgcactaacacaataataaacattgctagtgacgtgttagttt 204  Q
    |||||||||||||||||||||||||     ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24610084 caatttgaatgaatgaatatcattt-----tatttttgtcaaaaaaaatattaactttgcactaacacaataataaacattgctagtgacgtgttagttt 24609990  T
Q  205 gctttaatcttttttaacatatcaatcagcagttagaaattcttagaattaattataatatcttatgttcaactttgatatttatcactctatctatcaa 304  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24609989 gctttaatcttttttaacatatcaatcaccagttagaaattcttagaattaattataatatcttatgttcaactttgatatttatcactctatctatcaa 24609890  T
Q  305 ttttaacaaaataaaatgtgagttgcaggttctgagatcatagcacatgctaactgatctgacattatcat 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24609889 ttttaacaaaataaaatgtgagttgcaggttctgagatcatagcacatgctaactgatctgacattatcat 24609819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 11344027 - 11344106
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||| | ||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| ||||||||||    
T  11344027 gattcatcatttacgtttttagcgatgttgatcatgttattgtatctgatgtattatatcaatttgaataaatgaatatc 11344106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 48930925 - 48931004
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||||| ||| |||||||||||||||||||| ||||| | ||||||||||| ||||||||| ||||||||||||||    
T  48930925 gattcaacctatacgtttttagcgatattgatcatgttattgtctctgatgtattctatcaatttaaatgaatgaatatc 48931004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 35133165 - 35133244
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||| ||| ||| |||||| ||||||||||||| ||||| | ||||||||||| ||||||||||||||||||||||||    
T  35133165 gattcaccctatacgtttttaacgatattgatcatgttattgtctctgatgtattctatcaatttgaatgaatgaatatc 35133244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 28476444 - 28476520
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaat 124  Q
    |||||| | ||||| |||||||| ||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||    
T  28476444 gattcaccatttacgtttttagcaatattgatcatgttattatctctgatgtattctatcaatatgaatgaatgaat 28476520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 25068275 - 25068354
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||| | ||||| ||||||||||||||||| || ||||| | ||||||||||| |||||||||||| |||||||||||    
T  25068275 gattcaccatttacgtttttagcgatattgatgatgttattgtttctgatgtattctatcaatttgaaagaatgaatatc 25068354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 38880479 - 38880422
Alignment:
Q  66 ttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaa 123  Q
    ||||||||||||||||| ||||||||||||||||||| || |||||||||| ||||||    
T  38880479 ttagcgatattgatcatgttattatatctgatgtattctaacaatttgaataaatgaa 38880422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 3876125 - 3876042
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||| ||||||  |||||||||||| ||||| ||| ||||||||| |||||||||||| ||| |||||||||||    
T  3876125 gattcatcatttacgtttttaatgatattgatcatgttattgtatttgatgtattctatcaatttgaacgaaagaatatcattt 3876042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 4999887 - 4999823
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||| |||| ||||| || ||||| |||||||| |||||||| ||||||||||||||||||||    
T  4999887 tttttatcgatgttgatgatgttattgtatctgatatattatattaatttgaatgaatgaatatc 4999823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 25255452 - 25255521
Alignment:
Q  55 cctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatat 126  Q
    ||||||| |||||||||||||||| ||| ||||||||| |||||||   | |||||||||||||||||||||    
T  25255452 cctttacgtttttagcgatattgaacatgttattatatttgatgta--ctctcaatttgaatgaatgaatat 25255521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 31481944 - 31481892
Alignment:
Q  75 ttgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||    
T  31481944 ttgatcatgttattgtatatgatgtattctatcaatttgaatgaatgaatatc 31481892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 3222945 - 3222906
Alignment:
Q  92 tctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  3222945 tctgatgtattatatcaatttaaatgaatgaatatcattt 3222906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 38439934 - 38440004
Alignment:
Q  57 tttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||||||| ||| ||||||||  |||| |||| ||| |||||||||||||| |||||||| |||||    
T  38439934 tttacatttttagtgatgttgatcatgatattgtatcagatatattatatcaatttaaatgaatgcatatc 38440004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 11654043 - 11654096
Alignment:
Q  73 tattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatat 126  Q
    ||||||| || ||||| ||| ||||||||| |||||||||||||||||||||||    
T  11654043 tattgatgatgttattgtatttgatgtattctatcaatttgaatgaatgaatat 11654096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 24069264 - 24069195
Alignment:
Q  58 ttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||| ||||||||||| ||||| || ||||| ||||||| ||||| |||| |||||||| ||||||||||    
T  24069264 ttacgtttttagcgatgttgattatgttattttatctgaggtattctatcgatttgaatcaatgaatatc 24069195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 46822607 - 46822538
Alignment:
Q  57 tttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatat 126  Q
    ||||| ||| ||||||| |||||||| ||||| ||||| ||| ||| |||||||||||||||||| ||||    
T  46822607 tttacgtttgtagcgatgttgatcatgttattgtatctaatgcattctatcaatttgaatgaatggatat 46822538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 130
Target Start/End: Complemental strand, 37890200 - 37890165
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcatt 130  Q
    |||||| |||||||||||||||||||||||||||||    
T  37890200 gatgtactatatcaatttgaatgaatgaatatcatt 37890165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 40741822 - 40741865
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    ||||||| ||||||||||||||||||| |||||||||| |||||    
T  40741822 tgatgtactatatcaatttgaatgaattaatatcattttatttt 40741865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 2407850 - 2407896
Alignment:
Q  91 atctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    |||||||||||| ||||||||| |||||||||||||| ||| |||||    
T  2407850 atctgatgtattctatcaatttaaatgaatgaatatcttttaatttt 2407896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 126
Target Start/End: Complemental strand, 8169309 - 8169279
Alignment:
Q  96 atgtattatatcaatttgaatgaatgaatat 126  Q
    |||||||||||||||||||||||||||||||    
T  8169309 atgtattatatcaatttgaatgaatgaatat 8169279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 25287033 - 25286983
Alignment:
Q  87 ttatatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    |||||||||||||| | ||||||||||||||||| |||||| ||| |||||    
T  25287033 ttatatctgatgtactctatcaatttgaatgaataaatatcgttttatttt 25286983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 26017377 - 26017332
Alignment:
Q  85 tattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||||    
T  26017377 tattatatc-gatgtactctatcaatttgaatgaatgaatatcattt 26017332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 10574789 - 10574826
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  10574789 tgatgtactctatcaatttgaatgaatgaatatcattt 10574826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 14733778 - 14733741
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  14733778 tgatgtatcatatcaatttgaatgaatgaatgtcattt 14733741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 30992542 - 30992498
Alignment:
Q  86 attatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||| |||||| | ||||||||||||||||||||||||||||    
T  30992542 attatatc-gatgtactctatcaatttgaatgaatgaatatcattt 30992498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 46821619 - 46821546
Alignment:
Q  54 acctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||| |||||| |||| |||||||| |||||  || |||| |||| ||| ||||| ||||||||||||||    
T  46821619 acctttacgtttttaacgatgttgatcatgttattgcatatgatatattctattaatttaaatgaatgaatatc 46821546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 32312925 - 32312961
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  32312925 gatgtactctatcaatttgaatgaatgaatatcattt 32312961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 34893511 - 34893547
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  34893511 gatgtactctatcaatttgaatgaatgaatatcattt 34893547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 35261553 - 35261589
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcatt 130  Q
    ||||||| | |||||||||||||||||||||||||||    
T  35261553 tgatgtactctatcaatttgaatgaatgaatatcatt 35261589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 38)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 14585895 - 14585979
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcatttc 132  Q
    |||||| ||| ||| |||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| ||||    
T  14585895 gattcaccctatacgtttttagcgatattgatcatgttattatctctgatgtattctatcaatttgaatgaatgaatatcctttc 14585979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 18890555 - 18890491
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||||||||| ||||| ||||| | ||||||||||| ||||||||||||||||||||||||    
T  18890555 tttttagcgatattaatcatgttattgtctctgatgtattctatcaatttgaatgaatgaatatc 18890491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 8868035 - 8868102
Alignment:
Q  57 tttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaat 124  Q
    ||||| |||||||| || |||||||| ||||| ||||||||||||| |||||||||||||||||||||    
T  8868035 tttacgtttttagcaatgttgatcatgttattgtatctgatgtattctatcaatttgaatgaatgaat 8868102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 42046439 - 42046518
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||| ||| ||| |||||||||||||||||||| ||||| |  |||||||||| |||| |||||||||||||||||||    
T  42046439 gattcaccctatacgtttttagcgatattgatcatgttattgtcactgatgtattctatcgatttgaatgaatgaatatc 42046518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 19443919 - 19443846
Alignment:
Q  64 ttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    ||||| |||| |||| ||| ||||||||||||||||| | |||||||||||||||||||||||| ||| |||||    
T  19443919 ttttaacgatgttgaacatgttattatatctgatgtactctatcaatttgaatgaatgaatatcgttttatttt 19443846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 34610069 - 34610133
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||| ||||| || || ||||| ||||||||||||||||||||||||||||||| ||||||    
T  34610069 tttttagcaatattaatgatgttattgtatctgatgtattatatcaatttgaatgaataaatatc 34610133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 26469021 - 26468938
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||| |||||||| || || ||||| ||||||||| |||||||||| || ||||||||| ||||||||||||||    
T  26469021 gattcaccatttacgtttttagcaatgttaatcatgttattatatatgatgtattacattaatttgaataaatgaatatcattt 26468938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 43833867 - 43833788
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||| | ||||| |||||||||||||||||||| ||||| | | ||||||||| ||||||||||| || |||||||||    
T  43833867 gattcaccatttacttttttagcgatattgatcatgttattgtctttgatgtattctatcaatttgattggatgaatatc 43833788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 41896735 - 41896812
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatat 126  Q
    |||||| ||| ||| |||||||| ||||||||||| |||||   ||||||||||| |||||||||||||||||||||||    
T  41896735 gattcaccctatacgtttttagcaatattgatcatgttattgc-tctgatgtattctatcaatttgaatgaatgaatat 41896812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 34680707 - 34680666
Alignment:
Q  96 atgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  34680707 atgtattatatcaatttgaatgaatgaatatcattttatttt 34680666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 11267286 - 11267330
Alignment:
Q  109 atttgaatgaatgaatatcattt-cattttatttttgtcaaaaaa 152  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  11267286 atttgaatgaatgaatatcattttcattttatttttgtcaaaaaa 11267330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 18846325 - 18846261
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||| ||| |||||||  ||||| |||||||||||||||||||| || ||||||||||||||    
T  18846325 tttttagtgatgttgatcaagttattgtatctgatgtattatatcaaattaaatgaatgaatatc 18846261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 8054527 - 8054482
Alignment:
Q  85 tattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||    
T  8054527 tattatatc-gatgtattctatcaatttgaatgaatgaatatcattt 8054482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 15344560 - 15344617
Alignment:
Q  92 tctgatgtattatatcaatttgaatgaatgaatatcatttcattttatttttgtcaaaaaata 154  Q
    ||||||||||| ||||||||||||||||| ||||     ||||||||||||||||||||||||    
T  15344560 tctgatgtattctatcaatttgaatgaataaata-----tcattttatttttgtcaaaaaata 15344617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 15433625 - 15433682
Alignment:
Q  92 tctgatgtattatatcaatttgaatgaatgaatatcatttcattttatttttgtcaaaaaata 154  Q
    ||||||||||| ||||||||||||||||| ||||     ||||||||||||||||||||||||    
T  15433625 tctgatgtattctatcaatttgaatgaataaata-----tcattttatttttgtcaaaaaata 15433682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 15524929 - 15524986
Alignment:
Q  92 tctgatgtattatatcaatttgaatgaatgaatatcatttcattttatttttgtcaaaaaata 154  Q
    ||||||||||| ||||||||||||||||| ||||     ||||||||||||||||||||||||    
T  15524929 tctgatgtattctatcaatttgaatgaataaata-----tcattttatttttgtcaaaaaata 15524986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 40618913 - 40618876
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  40618913 tatctgatgtattctatcaatttgaatgaatgaatatc 40618876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 470995 - 470951
Alignment:
Q  82 tattattatatctgatgtattatatcaatttgaatgaatgaatat 126  Q
    ||||||| ||||||||||||| ||||||||| |||||||||||||    
T  470995 tattattgtatctgatgtattctatcaatttaaatgaatgaatat 470951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 3673687 - 3673727
Alignment:
Q  87 ttatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||  |||||||||||||||||||||||||||||||    
T  3673687 ttatatctagtgtattatatcaatttgaatgaatgaatatc 3673727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 1236536 - 1236497
Alignment:
Q  92 tctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  1236536 tctgatgtattctatcgatttgaatgaatgaatatcattt 1236497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 12654326 - 12654369
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    |||||||||||||| |||||||||||| |||||||||| |||||    
T  12654326 tgatgtattatatcgatttgaatgaataaatatcattttatttt 12654369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 16247064 - 16247017
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    |||||||||||||  |||||||||||| |||||||||||||| |||||    
T  16247064 tatctgatgtattccatcaatttgaataaatgaatatcattttatttt 16247017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 27498206 - 27498159
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    ||||||||||| | ||||||||||||||||||||||| |||| |||||    
T  27498206 tatctgatgtactctatcaatttgaatgaatgaatattattttatttt 27498159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 5457466 - 5457511
Alignment:
Q  85 tattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||||    
T  5457466 tattatatc-gatgtactctatcaatttgaatgaatgaatatcattt 5457511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 589069 - 589029
Alignment:
Q  85 tattatatctgatgtattatatcaatttgaatgaatgaatat 126  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  589069 tattatatc-gatgtattttatcaatttgaatgaatgaatat 589029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 624853 - 624893
Alignment:
Q  85 tattatatctgatgtattatatcaatttgaatgaatgaatat 126  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  624853 tattatatc-gatgtattttatcaatttgaatgaatgaatat 624893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 6314913 - 6314954
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||| |||||| | ||||||||||||||||||||||||||||    
T  6314913 tatccgatgtaatctatcaatttgaatgaatgaatatcattt 6314954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 9799722 - 9799685
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  9799722 tgatgtactctatcaatttgaatgaatgaatatcattt 9799685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 28086652 - 28086615
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  28086652 tatctgatgtactatatcaatttgaataaatgaatatc 28086615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 30568157 - 30568120
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  30568157 tgatgtaatctatcaatttgaatgaatgaatatcattt 30568120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 7579559 - 7579523
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  7579559 gatgtactctatcaatttgaatgaatgaatatcattt 7579523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 21238040 - 21238072
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatat 126  Q
    ||||||||| |||||||||||||||||||||||    
T  21238040 tgatgtattctatcaatttgaatgaatgaatat 21238072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 28296819 - 28296783
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  28296819 gatgtactctatcaatttgaatgaatgaatatcattt 28296783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 31712784 - 31712748
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  31712784 gatgtactctatcaatttgaatgaatgaatatcattt 31712748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 31720711 - 31720643
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| |||||||||  || | |||||||  |||||||| ||||||||| | ||||||||||||||||    
T  31720711 tttttatcgatattgaatatgtcattatattcgatgtattttatcaatttaagtgaatgaatatcattt 31720643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 40211143 - 40211103
Alignment:
Q  87 ttatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||||||||| | |||| |||||||||||||||||||    
T  40211143 ttatatctgatgtactctatcgatttgaatgaatgaatatc 40211103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 40490246 - 40490202
Alignment:
Q  99 tattatatcaatttgaatgaatgaatatcatttcattttattttt 143  Q
    |||| ||||||||||||||||| ||||||||||  ||||||||||    
T  40490246 tattgtatcaatttgaatgaataaatatcatttatttttattttt 40490202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 41684619 - 41684659
Alignment:
Q  87 ttatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||||||||| | ||||||||| ||||||||||||||    
T  41684619 ttatatctgatgtactctatcaatttaaatgaatgaatatc 41684659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 33332462 - 33332384
Alignment:
Q  49 attcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||| ||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| |||||    
T  33332462 attcaccctttacgtttttagcgatattgatcatattattgtctctgatgtattctatcaatttgaatgaatggatatc 33332384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 6155093 - 6155010
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| ||||||  ||||||||||| |||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||||||    
T  6155093 gattcaccctttatgtttttagcgatgttgatcattttattgtatctaatgtattctatcaatttgaatgaatgaatatcattt 6155010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 36161955 - 36162036
Alignment:
Q  56 ctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    |||||| |||||| |||| |||||||| ||||| ||| ||||||||| |||||||||||||||||||||||||||| |||||    
T  36161955 ctttacgtttttaacgatgttgatcatgttattgtatttgatgtattctatcaatttgaatgaatgaatatcattttatttt 36162036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 57 - 137
Target Start/End: Original strand, 43853688 - 43853768
Alignment:
Q  57 tttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    ||||||||||||||||| ||||  || ||||| ||||||||||||| |||||||||||||||||||||||| ||| |||||    
T  43853688 tttacatttttagcgatgttgagtatgttattgtatctgatgtattctatcaatttgaatgaatgaatatcgttttatttt 43853768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 7393435 - 7393502
Alignment:
Q  49 attcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaat 116  Q
    ||||| ||||||||||||||||||||||||||||| |||| |||||||| |||| |||||||||||||    
T  7393435 attcaccctttacatttttagcgatattgatcataatattgtatctgatatattctatcaatttgaat 7393502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 27652179 - 27652268
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    |||||| ||| ||| ||||||||||||| |||||| ||||| | | ||||||||| |||||||||||||||||||||||| ||| |||||    
T  27652179 gattcatcctatacgtttttagcgatatcgatcatgttattgtctttgatgtattctatcaatttgaatgaatgaatatcctttgatttt 27652268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 18936033 - 18936097
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||||||||||||||  |||| | ||||||||||| ||||||||||||||||||||||||    
T  18936033 tttttagcgatattgatcatgctattgtctctgatgtattctatcaatttgaatgaatgaatatc 18936097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 36194959 - 36195023
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||| |||||||||| | ||||||| ||||||||||| ||||||||||||||||||||||||    
T  36194959 tttttagtgatattgatcgtgttattatgtctgatgtattctatcaatttgaatgaatgaatatc 36195023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 52933814 - 52933734
Alignment:
Q  56 ctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcatttcattt 136  Q
    |||||||||||||||||| ||| |||| ||||| ||||| ||||||| ||||||||||||| |||||||||| ||| ||||    
T  52933814 ctttacatttttagcgatgttggtcatgttattgtatctaatgtattttatcaatttgaataaatgaatatcgttttattt 52933734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 1621384 - 1621305
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||| ||| ||| |||||||| ||||||||||| ||||| | ||||||||||| ||| ||||||||||||||||||||    
T  1621384 gattcaccctatacgtttttagcaatattgatcatgttattgtctctgatgtattctataaatttgaatgaatgaatatc 1621305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 37465724 - 37465788
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||| |||| |||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||    
T  37465724 tttttaacgatgttgatcatgttattgtatctgatgtattctatcaatttaaatgaatgaatatc 37465788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 42032396 - 42032323
Alignment:
Q  54 acctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||  |||||| |||| ||||| || |||||| || ||||||||| ||||||||||||||||||||||||    
T  42032396 acctttatgtttttaacgatgttgattatgttattacatatgatgtattctatcaatttgaatgaatgaatatc 42032323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 48351067 - 48350999
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaat 116  Q
    |||||| ||||||| || |||||||| |||||||| | ||| ||||||||||||| |||||||||||||    
T  48351067 gattcatcctttacgttattagcgatgttgatcatgtcattgtatctgatgtattctatcaatttgaat 48350999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 131
Target Start/End: Complemental strand, 31891159 - 31891073
Alignment:
Q  49 attcaacctttacatttttagcgatattgatc----atattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||| ||| ||| ||||||||||||||||||    || || || | ||||||||||| ||||||||||||||||| ||||||||||    
T  31891159 attcaccctatacgtttttagcgatattgatcgatcatgtttttgtctctgatgtattctatcaatttgaatgaataaatatcattt 31891073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 46716612 - 46716568
Alignment:
Q  86 attatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||    
T  46716612 attatatc-gatgtactatatcaatttgaatgaatgaatatcattt 46716568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 28857672 - 28857704
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||||||||||||||||||||||||||||    
T  28857672 gatgtattatatcaatttgaatgaatgaatatc 28857704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 12493595 - 12493646
Alignment:
Q  86 attatatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    ||||||| ||||||| | ||||||||| |||||||||||||||||| |||||    
T  12493595 attatatttgatgtactctatcaattttaatgaatgaatatcattttatttt 12493646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 131
Target Start/End: Complemental strand, 35395500 - 35395465
Alignment:
Q  96 atgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||||||||||||||||| ||||||||||    
T  35395500 atgtattatatcaatttgaatgaataaatatcattt 35395465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 9549828 - 9549872
Alignment:
Q  86 attatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||| |||||| ||||| ||||||||||||||||||||||||    
T  9549828 attatatc-gatgtactatattaatttgaatgaatgaatatcattt 9549872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 9714148 - 9714228
Alignment:
Q  50 ttcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||| ||||||| |||||| |||| |||||||  ||||| | | | ||||||| |||||||||||||||| |||||||||||    
T  9714148 ttcaccctttacgtttttaacgat-ttgatcaggttattgtcttttatgtattctatcaatttgaatgaacgaatatcattt 9714228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 13634382 - 13634423
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||| | |||| |||||||||||||||||||||||    
T  13634382 tatctgatgtactctatcgatttgaatgaatgaatatcattt 13634423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 14542230 - 14542190
Alignment:
Q  86 attatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  14542230 attatatc-gatgtattctatcaatttgaatgaatgaatatc 14542190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 44374993 - 44374949
Alignment:
Q  86 attatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||| |||||| | ||||||||||||||||||||||||||||    
T  44374993 attatatc-gatgtactctatcaatttgaatgaatgaatatcattt 44374949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 51888052 - 51888007
Alignment:
Q  92 tctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    |||||| |||| ||||||||||||||||||||| |||||| |||||    
T  51888052 tctgatatattctatcaatttgaatgaatgaatgtcattttatttt 51888007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 131
Target Start/End: Complemental strand, 52555454 - 52555425
Alignment:
Q  102 tatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||||||||||||||||||||||    
T  52555454 tatatcaatttgaatgaatgaatatcattt 52555425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 24100558 - 24100594
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  24100558 gatgtactctatcaatttgaatgaatgaatatcattt 24100594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 38545862 - 38545830
Alignment:
Q  96 atgtattatatcaatttgaatgaatgaatatca 128  Q
    ||||| |||||||||||||||||||||||||||    
T  38545862 atgtactatatcaatttgaatgaatgaatatca 38545830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 38943853 - 38943817
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  38943853 gatgtactctatcaatttgaatgaatgaatatcattt 38943817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 52979008 - 52979048
Alignment:
Q  87 ttatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||||||||| || ||||||||||||||| |||||||    
T  52979008 ttatatctgatgtactagatcaatttgaatgaaagaatatc 52979048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 56236527 - 56236491
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  56236527 gatgtactctatcaatttgaatgaatgaatatcattt 56236491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 2979179 - 2979081
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcatttcattttatttttgtca 147  Q
    |||||| ||| |||||||||||||||||||||||| ||||| | ||||||||||| ||||||||||||| ||||||||||      ||||||||||||||    
T  2979179 gattcaccctatacatttttagcgatattgatcatgttattgtttctgatgtattctatcaatttgaataaatgaatatc------ttttatttttgtca 2979086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 35920854 - 35920786
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||||| ||||||||| | ||| ||||||||||||||||||||||||| ||||||||||||||||    
T  35920854 tttttagcgacattgatcatgtgattgtatctgatgtattatatcaatttgattgaatgaatatcattt 35920786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 14211442 - 14211521
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||| ||| ||| ||||||||||||||||||||  |||| | | ||||||||||||||||||||||||||||||||||    
T  14211442 gattcaccctatacgtttttagcgatattgatcatgctattgtctatgatgtattatatcaatttgaatgaatgaatatc 14211521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 19103340 - 19103262
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatat 126  Q
    |||||| ||| ||| |||||||||||||||||||| ||||| | ||||||||||| ||||||||||||||||| |||||    
T  19103340 gattcatcctatacgtttttagcgatattgatcatgttattgtctctgatgtattctatcaatttgaatgaataaatat 19103262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 28540779 - 28540690
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    |||||| ||| ||| |||||||||||||||||||| ||||| | | ||||||||| ||||||||| |||||||||||||| |||| ||||    
T  28540779 gattcaccctatacgtttttagcgatattgatcatgttattgtctttgatgtattttatcaatttaaatgaatgaatatcctttcttttt 28540690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 137
Target Start/End: Original strand, 16758781 - 16758843
Alignment:
Q  75 ttgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    |||||||||||||||||||| ||||||| ||||||||| |||||| ||||||||||| |||||    
T  16758781 ttgatcatattattatatcttatgtattctatcaatttaaatgaaagaatatcattttatttt 16758843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 24874744 - 24874822
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatat 126  Q
    |||||| ||||||| ||||||| |||||||||||||||||  ||| |||||||| |||||||||| ||| |||||||||    
T  24874744 gattcatcctttacgtttttagggatattgatcatattatcctatatgatgtatcatatcaattttaataaatgaatat 24874822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 39567500 - 39567562
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaata 125  Q
    ||||||| |||||||||||| ||||| | | ||||||||||||||||||||||||||||||||    
T  39567500 tttttagtgatattgatcatgttattgtctttgatgtattatatcaatttgaatgaatgaata 39567562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 19121127 - 19121210
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| ||||||| |||| || ||| |||  ||| ||||| ||||||||||| | ||||||||||||||||||||||| ||||    
T  19121127 gattcaccctttacgttttcagagatgttggacatgttattgtatctgatgtagtttatcaatttgaatgaatgaatataattt 19121210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 15710947 - 15710984
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  15710947 tgatgtattctatcaatttgaatgaatgaatatcattt 15710984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 36057147 - 36057106
Alignment:
Q  96 atgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  36057147 atgtattatatcgatttgaatgaatgaatatcattttatttt 36057106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 8088054 - 8088014
Alignment:
Q  91 atctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  8088054 atctgatgcattctatcaatttgaatgaatgaatatcattt 8088014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 131
Target Start/End: Complemental strand, 28423745 - 28423710
Alignment:
Q  96 atgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||| ||||||||||||||||||||||||||||||    
T  28423745 atgtactatatcaatttgaatgaatgaatatcattt 28423710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 138
Target Start/End: Complemental strand, 33486279 - 33486236
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcatttcatttta 138  Q
    |||||||| |||||||||||||||||||||||| ||| ||||||    
T  33486279 gatgtattctatcaatttgaatgaatgaatatcttttaatttta 33486236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 137
Target Start/End: Complemental strand, 12628222 - 12628188
Alignment:
Q  103 atatcaatttgaatgaatgaatatcatttcatttt 137  Q
    ||||||||||||||||||||||||||||| |||||    
T  12628222 atatcaatttgaatgaatgaatatcatttaatttt 12628188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 5378698 - 5378742
Alignment:
Q  86 attatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||| |||||| | ||||||||||||||||||||||||||||    
T  5378698 attatatc-gatgtactctatcaatttgaatgaatgaatatcattt 5378742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 8984827 - 8984794
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||| ||||||||||||||||||||||||    
T  8984827 tgatgtattctatcaatttgaatgaatgaatatc 8984794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Complemental strand, 26905342 - 26905309
Alignment:
Q  98 gtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||||||| ||||||||||||||||||    
T  26905342 gtattatatcaattttaatgaatgaatatcattt 26905309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 34866843 - 34866872
Alignment:
Q  102 tatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||||||||||||||||||||||    
T  34866843 tatatcaatttgaatgaatgaatatcattt 34866872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 17218127 - 17218163
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  17218127 gatgtactctatcaatttgaatgaatgaatatcattt 17218163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 24229629 - 24229589
Alignment:
Q  87 ttatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||||||||| | |||| |||||||||||||||||||    
T  24229629 ttatatctgatgtactctatcgatttgaatgaatgaatatc 24229589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 40775165 - 40775201
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  40775165 gatgtactctatcaatttgaatgaatgaatatcattt 40775201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 41358430 - 41358473
Alignment:
Q  86 attatatctgatgtattatatcaatttgaatgaatgaatatcatt 130  Q
    |||||||| |||||| | |||||||||||||||||||||||||||    
T  41358430 attatatc-gatgtactctatcaatttgaatgaatgaatatcatt 41358473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 16235656 - 16235724
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||| ||||||||||    
T  16235656 tttttagcgatattgatcatattattgtctctgatgtattctatcaatttgaatgaataaatatcattt 16235724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 53508437 - 53508520
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| ||||||  |||||||||||||||||||| ||||| ||||||||||||| |||||| || ||||||||||||||||||    
T  53508437 gattcaccctttatgtttttagcgatattgatcatgttattgtatctgatgtattctatcaaattaaatgaatgaatatcattt 53508520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 127
Target Start/End: Original strand, 41818432 - 41818509
Alignment:
Q  50 ttcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||| |||||| ||||||||||||||| || || ||||||| ||||||||||| ||||||||||||||||||||||||    
T  41818432 ttcaccctttatatttttagcgatattaatgatgttattatctctgatgtattctatcaatttgaatgaatgaatatc 41818509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 42460964 - 42461040
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaat 124  Q
    |||||| ||||||||||| |||||||||||||||| ||||| | ||||||||||| | |||||||||||||||||||    
T  42460964 gattcaccctttacatttatagcgatattgatcatgttattgtctctgatgtattctgtcaatttgaatgaatgaat 42461040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 21289687 - 21289608
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||| ||| ||| |||||||||||||||||||| ||||| | ||||||| ||| ||||||||||||||||||||||||    
T  21289687 gattcaccctatacgtttttagcgatattgatcatgttattgtctctgatgcattctatcaatttgaatgaatgaatatc 21289608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 8914942 - 8915006
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||||||||||| || ||||| | ||||||||||| ||||||||||||||||||||||||    
T  8914942 tttttagcgatattgatgatgttattgtctctgatgtattctatcaatttgaatgaatgaatatc 8915006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 27706084 - 27706020
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||||||| |||||| ||||| | ||||||||||| ||||||||||||||||||||||||    
T  27706084 tttttagcgatatcgatcatgttattgtctctgatgtattctatcaatttgaatgaatgaatatc 27706020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 51923957 - 51924021
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||||||||||||||| ||||| | ||||||| ||| ||||||||||||||||||||||||    
T  51923957 tttttagcgatattgatcatgttattgtctctgatgcattctatcaatttgaatgaatgaatatc 51924021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 27856380 - 27856451
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaa 119  Q
    |||||| | ||||| |||||||||||||||||||| ||||| | |||||||| || ||||||||||||||||    
T  27856380 gattcatcttttacgtttttagcgatattgatcatgttattgtgtctgatgtgttttatcaatttgaatgaa 27856451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 50194176 - 50194137
Alignment:
Q  92 tctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  50194176 tctgatgtattatatcaatttgaatgaatgaatatcattt 50194137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 38142741 - 38142814
Alignment:
Q  49 attcaacctttacatttttagcgatat--tgatcatattattatatctgatgtattatatcaatttgaatgaat 120  Q
    ||||| |||||||||||||||||||||  ||||||| ||| | ||||| ||||||| |||||||||||||||||    
T  38142741 attcaccctttacatttttagcgatatgctgatcattttactgtatctaatgtattctatcaatttgaatgaat 38142814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 3085160 - 3085092
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||| ||  ||| ||| ||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  3085160 tttttagcaatgatgaccatgttattgtatctgaagtattctatcaatttgaatgaatgaatatcattt 3085092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 7546846 - 7546910
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||||||||||||||| | ||| | | ||||||||| ||||||||||||| ||||||||||    
T  7546846 tttttagcgatattgatcatgtcattgtctttgatgtattttatcaatttgaataaatgaatatc 7546910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 51487297 - 51487381
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtatt-----atatcaatttgaatgaatgaatatc 127  Q
    |||||| ||||||| |||||||||||||| ||||| ||||||| ||| |||||||      ||||||||||||||||||||||||    
T  51487297 gattcaccctttacgtttttagcgatattaatcatgttattatctctaatgtattctatcctatcaatttgaatgaatgaatatc 51487381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 14859734 - 14859777
Alignment:
Q  83 attattatatctgatgtattatatcaatttgaatgaatgaatat 126  Q
    |||||| ||||||||||||| |||||||||||||||||||||||    
T  14859734 attattgtatctgatgtattctatcaatttgaatgaatgaatat 14859777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 52115881 - 52115807
Alignment:
Q  57 tttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||| |||||||||||||  ||||| ||||| | || |||||||| ||||||||||||| ||||||||| ||||    
T  52115881 tttacgtttttagcgatatcaatcatgttattgtctccgatgtattctatcaatttgaataaatgaatattattt 52115807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 628762 - 628725
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  628762 tgatgtattctatcaatttgaatgaatgaatatcattt 628725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 4822057 - 4822098
Alignment:
Q  96 atgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    ||||||| |||||||||||||||||||||||||||| |||||    
T  4822057 atgtattttatcaatttgaatgaatgaatatcattttatttt 4822098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 32881197 - 32881160
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  32881197 tgatgtattctatcaatttgaatgaatgaatatcattt 32881160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 20464806 - 20464766
Alignment:
Q  91 atctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||||| | ||||||||||||||||||||||||||||    
T  20464806 atctgatgtactctatcaatttgaatgaatgaatatcattt 20464766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 35501479 - 35501443
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||| ||||||||||||||||||||||||||||    
T  35501479 gatgtattttatcaatttgaatgaatgaatatcattt 35501443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 25460815 - 25460776
Alignment:
Q  104 tatcaatttgaatgaatgaatatcatttcattttattttt 143  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  25460815 tatcaatttgaataaatgaatatcattttattttattttt 25460776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 35175653 - 35175696
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||    
T  35175653 tgatgtattctatcaatttgaatgaatgaatatcgttttatttt 35175696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 1650176 - 1650238
Alignment:
Q  64 ttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatat 126  Q
    ||||||||||||||| || |||||| ||| ||||||| | ||||||||  |||||||||||||    
T  1650176 ttttagcgatattgaacaaattattgtatatgatgtactctatcaattcaaatgaatgaatat 1650238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 36910611 - 36910561
Alignment:
Q  87 ttatatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    |||||||||||||| | |||| ||||||||||||||||||| ||| |||||    
T  36910611 ttatatctgatgtactctatcgatttgaatgaatgaatatcgttttatttt 36910561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 9797376 - 9797339
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  9797376 tatctgatgtactatatcgatttgaatgaatgaatatc 9797339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 17238058 - 17238095
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  17238058 tgatgtaatatctcaatttgaatgaatgaatatcattt 17238095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 20252059 - 20252096
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  20252059 tgatgtactttatcaatttgaatgaatgaatatcattt 20252096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 21533651 - 21533610
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||| | |||| |||||||||||||||||||||||    
T  21533651 tatctgatgtactctatcgatttgaatgaatgaatatcattt 21533610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 46304363 - 46304326
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  46304363 tatctgatgtactctatcaatttgaatgaatgaatatc 46304326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 47041890 - 47041849
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||| | |||| |||||||||||||||||||||||    
T  47041890 tatctgatgtaatctatctatttgaatgaatgaatatcattt 47041849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 48650576 - 48650535
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||| | |||| |||||||||||||||||||||||    
T  48650576 tatctgatgtactctatcgatttgaatgaatgaatatcattt 48650535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 55061754 - 55061807
Alignment:
Q  74 attgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||| ||||| ||||||||||||| |||||  ||||| |||||||||||    
T  55061754 attgatcatgttattgtatctgatgtattctatcaggttgaacgaatgaatatc 55061807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 7448759 - 7448719
Alignment:
Q  87 ttatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||| |||| | ||||||||||||||||||||||||    
T  7448759 ttatatctgttgtactctatcaatttgaatgaatgaatatc 7448719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 7456901 - 7456861
Alignment:
Q  87 ttatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||| |||| | ||||||||||||||||||||||||    
T  7456901 ttatatctgttgtactctatcaatttgaatgaatgaatatc 7456861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 128
Target Start/End: Original strand, 7658422 - 7658454
Alignment:
Q  96 atgtattatatcaatttgaatgaatgaatatca 128  Q
    ||||| |||||||||||||||||||||||||||    
T  7658422 atgtactatatcaatttgaatgaatgaatatca 7658454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 10977647 - 10977679
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||| ||||||||||||||||||||||||||    
T  10977647 gatgtactatatcaatttgaatgaatgaatatc 10977679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 11225762 - 11225790
Alignment:
Q  99 tattatatcaatttgaatgaatgaatatc 127  Q
    |||||||||||||||||||||||||||||    
T  11225762 tattatatcaatttgaatgaatgaatatc 11225790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 25939206 - 25939170
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  25939206 gatgtactttatcaatttgaatgaatgaatatcattt 25939170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 26715980 - 26715936
Alignment:
Q  74 attgatcatattattatatctgatgtattatatcaatttgaatga 118  Q
    ||||||||||||||| || ||||||| || |||||||||||||||    
T  26715980 attgatcatattattgtaactgatgtgttctatcaatttgaatga 26715936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 33076689 - 33076725
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  33076689 gatgtactctatcaatttgaatgaatgaatatcattt 33076725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 36540407 - 36540371
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| |||||||||||||||||||| |||||||||    
T  36540407 gatgtactatatcaatttgaatgaatggatatcattt 36540371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 36623967 - 36623931
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  36623967 gatgtactctatcaatttgaatgaatgaatatcattt 36623931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 48652153 - 48652117
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  48652153 gatgtactttatcaatttgaatgaatgaatatcattt 48652117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 4370 - 4445
Alignment:
Q  56 ctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| ||||||||||||||||| || ||||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  4370 ctttacgtttttagcgatattgatgatgttattgtatctgatgtattttatcaatttgaatgaatgaatattattt 4445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 30776880 - 30776963
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| ||||||| |||||||||||||||||||| ||||| | ||||| ||||| ||||||| ||||||||||||||||||||    
T  30776880 gattcaccctttacgtttttagcgatattgatcatgttattgtctctgacgtattctatcaatatgaatgaatgaatatcattt 30776963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 8102943 - 8103022
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||| | ||||| |||||||||||||||||||| ||||| | ||||||||||| ||||||| ||||||||||||||||    
T  8102943 gattcaccttttacgtttttagcgatattgatcatgttattgtctctgatgtattctatcaatatgaatgaatgaatatc 8103022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 14802055 - 14802123
Alignment:
Q  58 ttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatat 126  Q
    |||| |||||||||||||| ||||| ||||| | ||||||||||| |||||||||||||||||||||||    
T  14802055 ttacgtttttagcgatattaatcatgttattgtctctgatgtattctatcaatttgaatgaatgaatat 14802123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 679325 - 679408
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| ||||||| |||||||| || ||||| || ||||| ||||||||||||| ||||||||||||||||| |||| |||||    
T  679325 gattcaccctttacgtttttagcaatgttgattatgttattgtatctgatgtattctatcaatttgaatgaataaataacattt 679408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 1523621 - 1523699
Alignment:
Q  49 attcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||| ||||||| |||| ||| ||||||||||||||||| | ||||||||||| || |||| ||||||||||||||||    
T  1523621 attcatcctttacgttttcagcaatattgatcatattattttctctgatgtattctaccaatatgaatgaatgaatatc 1523699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 31851750 - 31851682
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||| |||||| | |||||  |||||||||||| ||||||||||||||||||||||| ||||    
T  31851750 tttttagcgatgttgatcttgttattgcatctgatgtattctatcaatttgaatgaatgaatattattt 31851682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 22571628 - 22571685
Alignment:
Q  70 cgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||| |||||||  ||||||||||||||||||| |||||||||||||||| |||||||    
T  22571628 cgattttgatcaacttattatatctgatgtattctatcaatttgaatgaacgaatatc 22571685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 546248 - 546320
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaat 120  Q
    |||||| ||| ||| |||||||||||||||||||| | ||| | |||||| |||| |||||||||||||||||    
T  546248 gattcatcctatacgtttttagcgatattgatcatgtcattgtgtctgatatattctatcaatttgaatgaat 546320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 10084998 - 10084942
Alignment:
Q  75 ttgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||| || ||||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  10084998 ttgatgatgttattctatctgatgtattctatcaatttgaatgaatgaatattattt 10084942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 32060124 - 32060171
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    ||||||||||| |||||||||||||||||||||||||| ||| |||||    
T  32060124 tatctgatgtaatatatcaatttgaatgaatgaatatcgttttatttt 32060171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 1450572 - 1450531
Alignment:
Q  96 atgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    |||||||||||| ||||||||||||||||||||||| |||||    
T  1450572 atgtattatatcgatttgaatgaatgaatatcattttatttt 1450531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 9380249 - 9380318
Alignment:
Q  57 tttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatat 126  Q
    |||||||||||| | || |||||||| ||||  ||| |||| |||||||||||||||||||| |||||||    
T  9380249 tttacatttttatcaatgttgatcatgttatagtatttgatatattatatcaatttgaatgagtgaatat 9380318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 126
Target Start/End: Original strand, 29744483 - 29744519
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatat 126  Q
    ||||||||||||| |||||||||||||||||||||||    
T  29744483 tatctgatgtattctatcaatttgaatgaatgaatat 29744519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 31297069 - 31297104
Alignment:
Q  92 tctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||||| ||||||||||||||||||||||||    
T  31297069 tctgatgtattctatcaatttgaatgaatgaatatc 31297104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 6957358 - 6957420
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaat 110  Q
    |||||| ||||||| ||||||||||| |||| ||||||||| ||| ||||||| | |||||||    
T  6957358 gattcaccctttacgtttttagcgatgttgaacatattattgtatttgatgtactctatcaat 6957420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 20845408 - 20845449
Alignment:
Q  85 tattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||| |||||| ||||||||||||||||||||||||||    
T  20845408 tattatatc-gatgtactatatcaatttgaatgaatgaatatc 20845449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 34185535 - 34185489
Alignment:
Q  91 atctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    ||||||| || | |||||||||||||||||||||||||||| |||||    
T  34185535 atctgatatactctatcaatttgaatgaatgaatatcattttatttt 34185489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 606452 - 606493
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||| | |||| |||||||||||||||||||||||    
T  606452 tatctgatgtactctatcgatttgaatgaatgaatatcattt 606493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 14174913 - 14174876
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  14174913 tatctgatgtaatatatcgatttgaatgaatgaatatc 14174876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 127
Target Start/End: Complemental strand, 14179449 - 14179412
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  14179449 tatctgatgtaatatatcgatttgaatgaatgaatatc 14179412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 6957228 - 6957268
Alignment:
Q  12 acagattcaatcaatgatttgggcttcaacgttgttgattc 52  Q
    |||||||||||||||||||| ||| |||||||||| |||||    
T  6957228 acagattcaatcaatgatttaggcatcaacgttgtagattc 6957268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 14731030 - 14731066
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||  ||||||||||||||||||||||||||||    
T  14731030 gatgtatgttatcaatttgaatgaatgaatatcattt 14731066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 10237090 - 10237011
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||| ||| ||| |||||||||||||||||||| ||||| | ||||||||||| ||||||||||||||||||||||||    
T  10237090 gattcaccctatacgtttttagcgatattgatcatgttattgtctctgatgtattctatcaatttgaatgaatgaatatc 10237011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 14955755 - 14955838
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| |||||| ||||||||||||||||||||| ||||| | ||| ||||||| ||||||||| ||||||||||||||||||    
T  14955755 gattcatcctttatatttttagcgatattgatcatgttattgtctcttatgtattctatcaatttaaatgaatgaatatcattt 14955838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 3309171 - 3309249
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatat 126  Q
    |||||| ||| ||| |||||||||||||||||||| ||||| | ||||||||||| |||||||||||||||||||||||    
T  3309171 gattcaccctatacgtttttagcgatattgatcatgttattgtctctgatgtattctatcaatttgaatgaatgaatat 3309249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 19595758 - 19595694
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||| |||||||||    
T  19595758 tttttagcgatcttgatcatgttattgtatctgatatattatatcaatttgaatgcatgaatatc 19595694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 131
Target Start/End: Original strand, 14416381 - 14416464
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||| || |||||||| |||| ||| ||||| ||||||||||||| ||||||||||||||||| ||||||||||    
T  14416381 gattcaccatttacgttgttagcgatgttgaacatgttattgtatctgatgtattctatcaatttgaatgaataaatatcattt 14416464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 16376216 - 16376283
Alignment:
Q  57 tttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaat 124  Q
    ||||||||| || | ||||  ||||||||||||||||||||||||| ||| |||||||||||||||||    
T  16376216 tttacatttgtaacaatatcaatcatattattatatctgatgtattttattaatttgaatgaatgaat 16376283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 6358746 - 6358676
Alignment:
Q  57 tttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||| ||||||  |||||||||||  ||||| |||||||||||||  |||||||||||||||||||||||    
T  6358746 tttacgtttttaatgatattgatcaagttattgtatctgatgtattccatcaatttgaatgaatgaatatc 6358676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 3460527 - 3460584
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaat 120  Q
    |||||||||||||||||||| ||||| | |||||| |||| |||||||||||||||||    
T  3460527 tttttagcgatattgatcatgttattgtctctgatatattctatcaatttgaatgaat 3460584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 3465576 - 3465640
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||| ||||||||||| ||||| | |||||| |||| ||||||||| ||||||||||||||    
T  3465576 tttttagcaatattgatcatgttattgtctctgatatattctatcaatttaaatgaatgaatatc 3465640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 131
Target Start/End: Complemental strand, 32448458 - 32448419
Alignment:
Q  92 tctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  32448458 tctgatgtattctatcaatttgaatgaatgaatatcattt 32448419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 12554039 - 12553965
Alignment:
Q  63 tttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    |||||||| || ||||  || ||||| |||||||| || | |||||||||||||||||||||||||||| |||||    
T  12554039 tttttagcaatgttgaatatgttattgtatctgatatactctatcaatttgaatgaatgaatatcattttatttt 12553965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 18107616 - 18107550
Alignment:
Q  56 ctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatga 122  Q
    |||||| ||||||| |||| ||| ||| ||||||||| ||||||| | |||||||||||||||||||    
T  18107616 ctttacgtttttagtgataatgaacatgttattatatgtgatgtactctatcaatttgaatgaatga 18107550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 19598074 - 19598148
Alignment:
Q  57 tttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||| ||||| || || |||||||| ||||||||||| || |||| ||||||||| |||||||| |||||||||    
T  19598074 tttacgttttttgcaatgttgatcatgttattatatcttatatattctatcaattttaatgaatggatatcattt 19598148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 126
Target Start/End: Complemental strand, 34128558 - 34128480
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatat 126  Q
    |||||| ||||||||||||| |||||||||| |||||||||  || |||| || | || |||||||||||||| |||||    
T  34128558 gattcaccctttacattttttgcgatattgaacatattattggatttgatttaatttaacaatttgaatgaataaatat 34128480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 137
Target Start/End: Complemental strand, 17248989 - 17248944
Alignment:
Q  92 tctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||    
T  17248989 tctgatgtattttatcgatttgaatgaatgaatatcattttatttt 17248944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 32519026 - 32519096
Alignment:
Q  59 tacatttttagcgatattgatcatattat--tatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||||||| | ||||||||||||||  | | ||||||||||| ||| ||||| ||||||||||||||    
T  32519026 tacatttttagcaaaattgatcatattatattgtctctgatgtattctattaatttaaatgaatgaatatc 32519096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 37994542 - 37994577
Alignment:
Q  92 tctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||||| ||||||||||||||||||||||||    
T  37994542 tctgatgtattctatcaatttgaatgaatgaatatc 37994577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 127
Target Start/End: Original strand, 5754698 - 5754739
Alignment:
Q  85 tattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  5754698 tattatatc-gatgtattctatcaatttgaatgaatgaatatc 5754739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 30399875 - 30399825
Alignment:
Q  87 ttatatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    |||||||||||||| |  |||||||||||| |||||||||||||| |||||    
T  30399875 ttatatctgatgtactcgatcaatttgaataaatgaatatcattttatttt 30399825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 1415814 - 1415855
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||| | |||| |||||||||||||||||||||||    
T  1415814 tatctgatgtaatctatcgatttgaatgaatgaatatcattt 1415855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 1421932 - 1421973
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||| | |||| |||||||||||||||||||||||    
T  1421932 tatctgatgtactttatcgatttgaatgaatgaatatcattt 1421973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 11550377 - 11550340
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  11550377 tgatgtactctatcaatttgaatgaatgaatatcattt 11550340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 11931268 - 11931312
Alignment:
Q  86 attatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||| |||||| | ||||||||||||||||||||||||||||    
T  11931268 attatatc-gatgtactttatcaatttgaatgaatgaatatcattt 11931312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Original strand, 24461702 - 24461743
Alignment:
Q  96 atgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    ||||||| |||||||||||||||||||||||| ||| |||||    
T  24461702 atgtattctatcaatttgaatgaatgaatatcgttttatttt 24461743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 30923296 - 30923259
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  30923296 tgatgtactctatcaatttgaatgaatgaatatcattt 30923259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 32092205 - 32092140
Alignment:
Q  62 atttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||| ||| |||||||||||||| ||||| |||| ||| ||| ||||||||| || ||||||    
T  32092205 atttttagtgatgttgatcatattattgtatcttatgtgttagatcgatttgaatgcattaatatc 32092140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 32197573 - 32197536
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  32197573 tgatgtattatatcaatttgaatgattaaatatcattt 32197536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 127
Target Start/End: Original strand, 37884056 - 37884089
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||| ||||||||||||||||||||||||||    
T  37884056 tgatgtactatatcaatttgaatgaatgaatatc 37884089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 4878444 - 4878408
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  4878444 gatgtactctatcaatttgaatgaatgaatatcattt 4878408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 12366272 - 12366308
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  12366272 gatgtactctatcaatttgaatgaatgaatatcattt 12366308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 15920278 - 15920314
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  15920278 gatgtactctatcaatttgaatgaatgaatatcattt 15920314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 18089108 - 18089076
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||| ||||||||||||||||||||||||||    
T  18089108 gatgtactatatcaatttgaatgaatgaatatc 18089076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 18141191 - 18141155
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  18141191 gatgtactctatcaatttgaatgaatgaatatcattt 18141155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 127
Target Start/End: Original strand, 26491705 - 26491737
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||| ||||||||||||||||||||||||    
T  26491705 gatgtattctatcaatttgaatgaatgaatatc 26491737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 28871662 - 28871585
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||| |||||| ||||||||| || ||||  || ||||| ||||||||||| | |  |||||||||||||||||||||    
T  28871662 gattcaccctttatatttttagcaatgttgaaaatgttattgtatctgatgtactct--caatttgaatgaatgaatatc 28871585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 48750405 - 48750483
Alignment:
Q  49 attcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||| ||| ||| |||||||||||||||||||| ||||| | ||||||||||| ||||||||||||||||||||||||    
T  48750405 attcaccctatacgtttttagcgatattgatcatgttattgtctctgatgtattctatcaatttgaatgaatgaatatc 48750483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 19061160 - 19061211
Alignment:
Q  92 tctgatgtattatatcaatttgaatgaatgaatatcatttcattttattttt 143  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19061160 tctgatgtattatatcaatttgaatgaatgaatatcatatcattttattttt 19061211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 36775583 - 36775504
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||| ||| ||| |||||||||||||||||||| ||||| | |||||||||||  |||||||||||||||||||||||    
T  36775583 gattcaccctatacgtttttagcgatattgatcatgttattgtctctgatgtattcaatcaatttgaatgaatgaatatc 36775504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 31692328 - 31692257
Alignment:
Q  60 acatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||| |||| |||||||| |||||| || ||||||||| ||||||||||||| ||||||||||||||    
T  31692328 acatttttaacgatgttgatcatgttattacatatgatgtattctatcaatttgaataaatgaatatcattt 31692257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 16162074 - 16162127
Alignment:
Q  74 attgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||||||||| | ||||||||||| ||||||| ||||||||||||||||    
T  16162074 attgatcatattattgtctctgatgtattctatcaatatgaatgaatgaatatc 16162127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 34479643 - 34479735
Alignment:
Q  58 ttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcatttcattttatttttgtcaaaaaa 152  Q
    |||| ||||||| ||| ||||  || ||||||||||||||||||| |  |||||| |||||||||||||| ||| ||||  ||||||||||||||    
T  34479643 ttacgtttttagtgatgttgaaaatgttattatatctgatgtattct--caatttaaatgaatgaatatcgttttatttattttttgtcaaaaaa 34479735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 127
Target Start/End: Complemental strand, 40163298 - 40163235
Alignment:
Q  64 ttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||||| ||||| |  ||||| ||||| ||||||| ||||||||||||||||||||||||    
T  40163298 ttttagcgatgttgattaagttattgtatctcatgtattctatcaatttgaatgaatgaatatc 40163235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 137
Target Start/End: Original strand, 44915889 - 44915936
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    ||||||||||| | |||||||||||||||||||||||||||| |||||    
T  44915889 tatctgatgtactctatcaatttgaatgaatgaatatcattttatttt 44915936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 50616539 - 50616468
Alignment:
Q  57 tttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatca 128  Q
    ||||| |||||||| || |||||||| ||||||||||| ||||||| ||||||||| ||| ||| |||||||    
T  50616539 tttacgtttttagcaatgttgatcatgttattatatctaatgtattttatcaatttaaataaataaatatca 50616468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 50624366 - 50624295
Alignment:
Q  57 tttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatca 128  Q
    ||||| |||||||| || |||||||| ||||||||||| ||||||| ||||||||| ||| ||| |||||||    
T  50624366 tttacgtttttagcaatgttgatcatgttattatatctaatgtattttatcaatttaaataaataaatatca 50624295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 13075529 - 13075455
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatga 122  Q
    |||||| ||||||| ||||||||||||||||| || ||||| ||||| || |||| |||||| || |||||||||    
T  13075529 gattcaccctttacttttttagcgatattgattatgttattgtatctaatatattctatcaacttaaatgaatga 13075455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 41994684 - 41994762
Alignment:
Q  49 attcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||| |||||| |||||||| ||| |||||||| ||||| |||||||| | || ||||||||||||| ||| ||||||    
T  41994684 attcatcctttaaatttttagtgattttgatcatgttattgtatctgatattttctatcaatttgaataaataaatatc 41994762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 39888432 - 39888469
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||||||||||||||||||| |||||||||||||    
T  39888432 tatctgatgtattatatcaatttgtatgaatgaatatc 39888469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 11121380 - 11121416
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||| ||||||||||||||||||||||||||||    
T  11121380 gatgtattctatcaatttgaatgaatgaatatcattt 11121416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 13969350 - 13969314
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||| ||||||||||||||||||||||||||||    
T  13969350 gatgtattctatcaatttgaatgaatgaatatcattt 13969314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 30853657 - 30853621
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||||||||||||||||| ||||||||||||||    
T  30853657 gatgtattatatcaatttgaataaatgaatatcattt 30853621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 50377570 - 50377610
Alignment:
Q  87 ttatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||||||||||||  ||||||||||||||||||||||||    
T  50377570 ttatatctgatgtatcttatcaatttgaatgaatgaatatc 50377610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 24583201 - 24583240
Alignment:
Q  92 tctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  24583201 tctgatgtattctatcgatttgaatgaatgaatatcattt 24583240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 24583397 - 24583436
Alignment:
Q  92 tctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  24583397 tctgatgtattctatcgatttgaatgaatgaatatcattt 24583436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 45789766 - 45789846
Alignment:
Q  55 cctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    ||||||||||||||||||| |||| ||| ||||| ||||||||| |   | ||||||| |||||||||||||| ||| |||||    
T  45789766 cctttacatttttagcgatgttgaacatgttattgtatctgatgca--ctctcaatttaaatgaatgaatatcgttttatttt 45789846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 47133154 - 47133189
Alignment:
Q  92 tctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||||| ||||||||||||||||||||||||    
T  47133154 tctgatgtattctatcaatttgaatgaatgaatatc 47133189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 25564225 - 25564294
Alignment:
Q  56 ctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaata 125  Q
    ||||| ||||||| | || |||||||| | ||| |||| |||||||||||||||||| ||||||| ||||    
T  25564225 ctttatatttttaacaatgttgatcatgtcattgtatcagatgtattatatcaattttaatgaataaata 25564294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 127
Target Start/End: Original strand, 26535586 - 26535623
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  26535586 tatctgatgtactctatcaatttgaatgaatgaatatc 26535623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 38646987 - 38647024
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  38646987 tgatgtactctatcaatttgaatgaatgaatatcattt 38647024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 49648697 - 49648660
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||||| ||||||||||||||| ||||||||||||    
T  49648697 tgatgtattttatcaatttgaatgagtgaatatcattt 49648660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 49652231 - 49652275
Alignment:
Q  86 attatatctgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||||| |||||| | ||||||||||||||||||||||||||||    
T  49652231 attatatc-gatgtactctatcaatttgaatgaatgaatatcattt 49652275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 8893696 - 8893732
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  8893696 gatgtactctatcaatttgaatgaatgaatatcattt 8893732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 12967443 - 12967407
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  12967443 gatgtactctatcaatttgaatgaatgaatatcattt 12967407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 26771510 - 26771546
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  26771510 gatgtactctatcaatttgaatgaatgaatatcattt 26771546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 34659351 - 34659315
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  34659351 gatgtactctatcaatttgaatgaatgaatatcattt 34659315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 46589552 - 46589588
Alignment:
Q  95 gatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||||| | ||||||||||||||||||||||||||||    
T  46589552 gatgtactctatcaatttgaatgaatgaatatcattt 46589588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 93338 - 93411
Alignment:
Q  64 ttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    |||||||||| || ||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  93338 ttttagcgatgtttatcatgttattttatctgatgtattttatcaatttgaatgaatgaatatcattttatttt 93411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 127
Target Start/End: Complemental strand, 53239 - 53206
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||| ||||||||||||||||||||||||||    
T  53239 tgatgtactatatcaatttgaatgaatgaatatc 53206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 1551 - 1472
Alignment:
Q  48 gattcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    |||||| ||| ||| |||| || |||||||||||| ||||| | ||||||||||| ||||||||||||||||||||||||    
T  1551 gattcaccctatacgttttaagggatattgatcatgttattgtctctgatgtattctatcaatttgaatgaatgaatatc 1472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 3911 - 3839
Alignment:
Q  55 cctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttgaatgaatgaatatc 127  Q
    ||||||||||||||||||| | |||||  ||||| |||| |||| | | ||||||||||||||||||||||||    
T  3911 cctttacatttttagcgatgtcgatcactttattgtatcagatgaactctatcaatttgaatgaatgaatatc 3839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 31116 - 31069
Alignment:
Q  90 tatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    ||||||||||| |||||||||||||||||||||||||| ||| |||||    
T  31116 tatctgatgtactatatcaatttgaatgaatgaatatcgttttatttt 31069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 92333 - 92292
Alignment:
Q  96 atgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    ||||||||||||||||||||||||||| |||||||| |||||    
T  92333 atgtattatatcaatttgaatgaatgagtatcattttatttt 92292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 137
Target Start/End: Complemental strand, 26882 - 26831
Alignment:
Q  86 attatatctgatgtattatatcaatttgaatgaatgaatatcatttcatttt 137  Q
    ||||||| ||||||| | ||||||||| |||||||||||||||||| |||||    
T  26882 attatatttgatgtactctatcaattttaatgaatgaatatcattttatttt 26831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 131
Target Start/End: Original strand, 245035 - 245069
Alignment:
Q  97 tgtattatatcaatttgaatgaatgaatatcattt 131  Q
    |||| ||||||||||||||||||||||||||||||    
T  245035 tgtactatatcaatttgaatgaatgaatatcattt 245069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 30290 - 30330
Alignment:
Q  85 tattatatctgatgtattatatcaatttgaatgaatgaatat 126  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  30290 tattatatc-gatgtattttatcaatttgaatgaatgaatat 30330  T

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Target: scaffold0146 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 16141 - 16104
Alignment:
Q  94 tgatgtattatatcaatttgaatgaatgaatatcattt 131  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  16141 tgatgtaatatctcaatttgaatgaatgaatatcattt 16104  T

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Target: scaffold0064 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 18955 - 18891
Alignment:
Q  49 attcaacctttacatttttagcgatattgatcatattattatatctgatgtattatatcaatttg 113  Q
    ||||| |||||| ||||| || ||| |||||||| ||||| ||||||||||||| |||| |||||    
T  18955 attcaccctttagattttcagggatgttgatcatgttattgtatctgatgtattctatcgatttg 18891  T

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