View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16770_low_6 (Length: 347)

Name: NF16770_low_6
Description: NF16770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16770_low_6
NF16770_low_6
[»] chr1 (1 HSPs)
chr1 (13-347)||(45515128-45515471)


Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 45515128 - 45515471
Alignment:
Q  13 aggaacagaacttgagtataccaaaatattggagcttgtggtcaacatggacttgtcacaaaacaatttggttggattcattccaaatgaaatcacaggg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45515128 aggaacagaacttgagtataccaaaatattggagcttgtggtcaacatggacttgtcacaaaacaatttggttggattcattccaaatgaaatcacatgg 45515227  T
Q  113 ct---------gcatggcttgaacttgtcaagaaatcatttgaaaggagagattcctcaattgatgggacgcatgaaatcactagaatccttggacctgt 203  Q
    ||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45515228 ctcacaggactgcatggcttgaacttgtcaagaaatcatttgaaaggagagattcctcaattgatgggacgcatgaaatcactagaatccttggacctgt 45515327  T
Q  204 ctcataaccaactttcaggcacaattcccagtaccatgtctgctttaacttcattgagtcatttgaacttgtcgtacaataacctttcaggatcaattcc 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45515328 ctcataaccaactttcaggcacaattcccagtaccatgtctgctttaacttcattgagtcatttgaacttgtcgtacaataacctttcaggatcaattcc 45515427  T
Q  304 caaagataatcagtttttaactttggatgacccgtatatttatg 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  45515428 caaagataatcagtttttaactttggatgacccgtatatttatg 45515471  T

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