View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16770_low_9 (Length: 324)
Name: NF16770_low_9
Description: NF16770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16770_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 42325850 - 42326146
Alignment:
| Q |
18 |
ctatgaatattttctctattggtgtttatattgtaattaattgatttttcttgtggtaattgaacagaggtacccctcaaattgaagtgacctttgaagt |
117 |
Q |
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| T |
42325850 |
ctatgaatattttctctattggtgtttatattgtaattaattgatttttcttgtggtaattgaacagaggtacccctcaaattgaagtgacctttgaagt |
42325949 |
T |
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| Q |
118 |
agatgcaaacggtattctaaatgtcagggcagaagacaagggcacaggtaaatcagaaaagatcaccattacaaatgaaaagggacgcctgagccaggag |
217 |
Q |
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| T |
42325950 |
agatgcaaacggtattctaaatgtcagggcagaagacaagggcacaggtaaatcagaaaagatcaccattacaaatgaaaagggacgcctgagtcaggag |
42326049 |
T |
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| Q |
218 |
gaaattgaccggatggttcgtgaagccgaggagtttgccgaggaagacaagaaagtgaaggaaagaattgatgctcggaatgctcttgaaacctatg |
314 |
Q |
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| T |
42326050 |
gaaattgaccggatggttcgtgaagccgaggagtttgccgaggaagacaagaaagtgaaggaaagaattgatgctcggaatgctcttgaaacctatg |
42326146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 48 - 314
Target Start/End: Original strand, 42273745 - 42274011
Alignment:
| Q |
48 |
ttgtaattaattgatttttcttgtggtaattgaacagaggtacccctcaaattgaagtgacctttgaagtagatgcaaacggtattctaaatgtcagggc |
147 |
Q |
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||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| ||||||| | ||| |
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| T |
42273745 |
ttgtaattaattggtttttcttgtggcaattgaacagaggcacccctcaaattgaagtcacctttgaagttgatgcaaatggtatcttaaatgtaaaggc |
42273844 |
T |
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| Q |
148 |
agaagacaagggcacaggtaaatcagaaaagatcaccattacaaatgaaaagggacgcctgagccaggaggaaattgaccggatggttcgtgaagccgag |
247 |
Q |
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| T |
42273845 |
agaagacaagggcaccggtaaatcagaaaagatcaccattacaaatgaaaagggacgtctaagccaggaggaaatcgaacggatggttcgtgaagcagag |
42273944 |
T |
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| Q |
248 |
gagtttgccgaggaagacaagaaagtgaaggaaagaattgatgctcggaatgctcttgaaacctatg |
314 |
Q |
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|||||||||||||| || || || || |||||||||||||| |||||||||||||| |||||||||| |
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| T |
42273945 |
gagtttgccgaggaggataaaaaggtcaaggaaagaattgacgctcggaatgctctggaaacctatg |
42274011 |
T |
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