View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16771_low_2 (Length: 512)
Name: NF16771_low_2
Description: NF16771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16771_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 460; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 15 - 503
Target Start/End: Complemental strand, 13976995 - 13976507
Alignment:
| Q |
15 |
gaaacaacatccatcatgtcaatggcattactacttaattccatagaagttttcaaaaccttagtcattgtttcaccagcttttgttgttgtatttacaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13976995 |
gaaacaacatccatcatgtcaatggcattactacttaattccatagaagttttcaaaaccttagtcattgtttcaccagcttttgttgttgtatttacaa |
13976896 |
T |
|
| Q |
115 |
aaccatctaaacatgtttgttgatgagaaagtgtaccagttaaccaaaccttgatatcaaaagcatattcacttagcttatggaaatcaaattggtccaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13976895 |
aaccatctaaacatgtttgttgatgagaaagtgtaccagttaaccaaaccttgatatcaaaagcatattcacttagcttatggaaatcaaattggtccaa |
13976796 |
T |
|
| Q |
215 |
tgtaccaacagatttatgaattccatcaacggcataatccaaaacttcgttgcaaatttccattgcttgttttgtcatgctgtcttttcccaattcttga |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13976795 |
tgtaccaacagatttatgaattccatcaacggcataatccaaaacttcgttgcaaatttccattgcttgttttgtcatgctgtcttttcccaattcttga |
13976696 |
T |
|
| Q |
315 |
taaagtgctgaattgtttatgtgtttccgtaattcctctgctgttgcactgaaagctgctttgataagctcttttgtgtcggttgatgacgcgttttcaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
13976695 |
taaagtgctgaattgtttatgtgtttccgtaattcctctgctgttgcactgaaagctgctttgataagctctttcgtgtcggttgatgacgcgttttcaa |
13976596 |
T |
|
| Q |
415 |
gacttttgtgacatgtttctttgtattctgttgattgacatagcatatcaacannnnnnngtgagtttgagatttgtgctgtttcttct |
503 |
Q |
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| T |
13976595 |
gacttttgtgacatgtttctttgtattctgttgattgacatagcatatcaacatttttttgtgagtttgagatttgtgctgtttgttct |
13976507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 15 - 467
Target Start/End: Complemental strand, 13966827 - 13966375
Alignment:
| Q |
15 |
gaaacaacatccatcatgtcaatggcattactacttaattccatagaagttttcaaaaccttagtcattgtttcaccagcttttgttgttgtatttacaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13966827 |
gaaacaacatccatcatgtcaatggcattactacttaattccatagaagttttcaaaaccttagtcattgtttcaccagcttttgtttttgtatttacaa |
13966728 |
T |
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| Q |
115 |
aaccatctaaacatgtttgttgatgagaaagtgtaccagttaaccaaaccttgatatcaaaagcatattcacttagcttatggaaatcaaattggtccaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13966727 |
aaccatctaaacatgtttgttgatgagaaagtgtaccagttaaccaaaccttgatatcaaaagcatattcacttagcttatggaaatcaaattggtccaa |
13966628 |
T |
|
| Q |
215 |
tgtaccaacagatttatgaattccatcaacggcataatccaaaacttcgttgcaaatttccattgcttgttttgtcatgctgtcttttcccaattcttga |
314 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| || ||||||||||| |
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| T |
13966627 |
tgtaccaacagatttatgaattccatcaacagcataatccaaaacttcattgcaaatttccatcgcttgttttgtcatgctgtctgttgccaattcttga |
13966528 |
T |
|
| Q |
315 |
taaagtgctgaattgtttatgtgtttccgtaattcctctgctgttgcactgaaagctgctttgataagctcttttgtgtcggttgatgacgcgttttcaa |
414 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| | | ||| ||| | | ||||||| ||||||| |
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| T |
13966527 |
taaagtgctgaattgtttatgtgtttccgtaattcctcttctgttgcacccaaagctcctttgatacgatttttcatgttgctgaatgacgctttttcaa |
13966428 |
T |
|
| Q |
415 |
gacttttgtgacatgtttctttgtattctgttgattgacatagcatatcaaca |
467 |
Q |
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|| |||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
13966427 |
gagttttgtgacatgtttctttgaattttgttgattgacatagcatatcaaca |
13966375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 13959281 - 13958904
Alignment:
| Q |
11 |
atcagaaacaacatccatcatgtcaatggcattactacttaattccatagaagttttcaaaaccttagtcattgtttcaccagcttttgttgttgtattt |
110 |
Q |
| |
|
|||| ||||| |||| | ||||||||| |||||||| ||||||| ||||| || |||||| || ||| |||||||||||| |||||||||||||||||| |
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| T |
13959281 |
atcataaacagcatcaaccatgtcaatagcattactgcttaattggatagacgtgttcaaagccctagccattgtttcaccggcttttgttgttgtattt |
13959182 |
T |
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| Q |
111 |
acaaaaccatctaaacatgtttgttgatgagaaagtgtaccagttaaccaaaccttgatatcaaaagcatattcacttagcttatggaaatcaaattggt |
210 |
Q |
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| T |
13959181 |
gcaaaaccatccaaacatgtttgttgatgagaaagtgtaccggttaaccaaactttgagatcataagaatattcatgtatcttattaatatcaaatttat |
13959082 |
T |
|
| Q |
211 |
ccaatgtaccaacagatttatgaattccatcaacggcataatccaaaacttcgttgcaaatttccattgcttgttttgtcatgctgtcttttcccaattc |
310 |
Q |
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||| || ||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| ||| ||||| |
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| T |
13959081 |
ccactgcaccaacagatttatgaattccatcaacagcataatccaaaacttcattgcaaacttccattgcttgttttgtcatcttgtcttgtcctaattc |
13958982 |
T |
|
| Q |
311 |
ttgataaagtgctgaattgtttatgtgtttccgtaattcctctgctgttgcactgaaagctgctttgataagctcttt |
388 |
Q |
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|||| ||| | |||| |||||||||||||| ||| ||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
13958981 |
ttgaataagagatgaactgtttatgtgtttcaataactcctctgatgttgcactgaaagctgctttgataaggtcttt |
13958904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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