View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16771_low_6 (Length: 295)
Name: NF16771_low_6
Description: NF16771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16771_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 43516081 - 43515936
Alignment:
| Q |
18 |
ataaggggagttggaaacatgttatttgcaggatgaggtctgagatcagaagaagaatcaccaattctgatcattattacacacctcttcctcaaaccat |
117 |
Q |
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| T |
43516081 |
ataaggggagttggaaacatgttatttgcaggatgaggtctgagatcagaagaagaatcaccaattctgatcattattacacacctcttcctcaaaccat |
43515982 |
T |
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| Q |
118 |
ggcttacacaaaatgaatcattccattccattcaagtagttaattc |
163 |
Q |
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| T |
43515981 |
ggcttacacaaaatgaatcattccattccattcaagtagttaattc |
43515936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 198 - 281
Target Start/End: Complemental strand, 43515903 - 43515820
Alignment:
| Q |
198 |
ccttaagataagatcaagtaagtgtacgtttgctatatgtttgttccttcttctgcttatatttcatgtgtattgctattattc |
281 |
Q |
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| T |
43515903 |
ccttaagataagatcaagtaagtgtacgtttgctatatgtttgttccttcttctgcttatatttcatgtgtattgctattattc |
43515820 |
T |
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