View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16771_low_8 (Length: 212)
Name: NF16771_low_8
Description: NF16771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16771_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 9961317 - 9961119
Alignment:
| Q |
1 |
tgtgatgtgataatgagaataatggagcgaatagttggcggaaaaagaaaagtagctcaaacatcaacacaatgattttaggtcttctcaaatctannnn |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9961317 |
tgtgttgtgataatgagaataatggagcgaatagttggcggaaaaagagaagtagctcaaacatcaacacaatgattttaggtcttctcaaatctaattt |
9961218 |
T |
|
| Q |
101 |
nnnnnnn---caagtaaaaattccacaaaagaaatagttcgctcatgggtaagaattgaaatatgaacactaattgtgatggtgttgttgcataatttt |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9961217 |
ttttttttttcaagtaaaaattccacaaaagaaatagttcgctcatgggtaagaattgaaatatgaacactaattgtgatggtgttgttgcataatttt |
9961119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University