View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16772_high_18 (Length: 258)

Name: NF16772_high_18
Description: NF16772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16772_high_18
NF16772_high_18
[»] chr3 (8 HSPs)
chr3 (25-247)||(36518865-36519086)
chr3 (16-145)||(36801966-36802095)
chr3 (80-211)||(17767611-17767745)
chr3 (80-211)||(19068912-19069046)
chr3 (57-211)||(25484706-25484859)
chr3 (177-247)||(36801901-36801970)
chr3 (71-211)||(1257700-1257839)
chr3 (133-211)||(43543729-43543806)
[»] chr1 (5 HSPs)
chr1 (17-211)||(26049333-26049526)
chr1 (26-228)||(16802918-16803119)
chr1 (57-157)||(36729472-36729572)
chr1 (102-209)||(26051434-26051540)
chr1 (57-123)||(20063057-20063124)
[»] chr8 (4 HSPs)
chr8 (25-211)||(375421-375606)
chr8 (60-228)||(410904-411071)
chr8 (57-211)||(33545620-33545764)
chr8 (25-67)||(411109-411151)
[»] chr4 (4 HSPs)
chr4 (17-157)||(24411936-24412076)
chr4 (57-183)||(11087534-11087660)
chr4 (134-211)||(5555640-5555716)
chr4 (138-211)||(12571470-12571542)
[»] chr5 (7 HSPs)
chr5 (57-211)||(1494507-1494660)
chr5 (57-155)||(10735230-10735328)
chr5 (71-157)||(33270863-33270949)
chr5 (86-194)||(36394550-36394658)
chr5 (17-62)||(33270983-33271028)
chr5 (133-211)||(31813205-31813282)
chr5 (25-66)||(36394665-36394706)
[»] chr6 (1 HSPs)
chr6 (57-172)||(240932-241047)
[»] scaffold0007 (3 HSPs)
scaffold0007 (71-152)||(197772-197853)
scaffold0007 (17-67)||(198466-198516)
scaffold0007 (17-67)||(197882-197932)
[»] chr2 (1 HSPs)
chr2 (133-211)||(10377064-10377141)


Alignment Details
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 25 - 247
Target Start/End: Original strand, 36518865 - 36519086
Alignment:
Q  25 cataattacaagacactagaaaataacttttatgcactccaactataacttcaggttatttctccttatctttagtcgaaaaccatatgcatgcaacaca 124  Q
    |||||||||||||||| |||||||||||| |||||||||||| | ||| ||||  | |||||||||||||||| | |||||||   ||||||||||||||    
T  36518865 cataattacaagacaccagaaaataacttatatgcactccaattgtaagttcatatcatttctccttatctttggccgaaaacagaatgcatgcaacaca 36518964  T
Q  125 ttaaatcatttggtcgaaaatgcggtatgtcgatgtttgtatgctctttgtcaaaatccatttgcacttttgcagtatgtcgaaatattttattattgat 224  Q
    |||||||| |||||| |||||| |||||||| | ||||| |||||||| ||| |||||||||||||| ||||||| ||||| |||||||||||| ||| |    
T  36518965 ttaaatcacttggtcaaaaatgtggtatgtcaaagtttgaatgctcttggtcgaaatccatttgcac-tttgcagcatgtcaaaatattttatttttggt 36519063  T
Q  225 attatcaataagttaatcttcat 247  Q
    |||| ||||||||||||||||||    
T  36519064 attaacaataagttaatcttcat 36519086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 36802095 - 36801966
Alignment:
Q  16 cacacttgacataattacaagacactagaaaataacttttatgcactccaactataacttcaggttatttctccttatctttagtcgaaaaccatatgca 115  Q
    |||||||| |||||||||||||||  ||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||    
T  36802095 cacacttggcataattacaagacagcagaaaataacttttatgcactccaattgtaactttaggttatttctccttatctttagtcgaaaaccatatgca 36801996  T
Q  116 tgcaacacattaaatcatttggtcgaaaat 145  Q
    ||||||||||||||||| ||||||||||||    
T  36801995 tgcaacacattaaatcacttggtcgaaaat 36801966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 211
Target Start/End: Original strand, 17767611 - 17767745
Alignment:
Q  80 ttatttctccttatctttagtcgaaaaccatatgc----atgcaacacattaaatcatttggtcgaaaatgcggtatgtcgatgtttgtatgctctttgt 175  Q
    |||||||||||||||||| ||| ||||||||||||    |||||||||||||| ||| |||||| ||| ||||||||||| | ||||||||| |||| ||    
T  17767611 ttatttctccttatctttggtcaaaaaccatatgcatgcatgcaacacattaagtcacttggtcaaaattgcggtatgtcaaagtttgtatgttcttagt 17767710  T
Q  176 caaaatccatttgcacttttgcagtatgtcgaaata 211  Q
    | |||||| ||||||| ||||||  |||||||||||    
T  17767711 cgaaatccctttgcac-tttgcaacatgtcgaaata 17767745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 80 - 211
Target Start/End: Original strand, 19068912 - 19069046
Alignment:
Q  80 ttatttctccttatctttagtcgaaaaccatatgc----atgcaacacattaaatcatttggtcgaaaatgcggtatgtcgatgtttgtatgctctttgt 175  Q
    |||||||||||||||||| ||| ||||||||||||    |||||||||||||| ||| |||||| ||| ||||||||||| | ||||||||| |||| ||    
T  19068912 ttatttctccttatctttggtcaaaaaccatatgcatgcatgcaacacattaagtcacttggtcaaaattgcggtatgtcaaagtttgtatgttcttagt 19069011  T
Q  176 caaaatccatttgcacttttgcagtatgtcgaaata 211  Q
    | |||||| ||||||| ||||||  |||||||||||    
T  19069012 cgaaatccctttgcac-tttgcaacatgtcgaaata 19069046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 211
Target Start/End: Original strand, 25484706 - 25484859
Alignment:
Q  57 tgcactccaactataacttcaggttatttctccttatctttagtcgaaaaccatatgcatgcaacacattaaatcatttggtcgaaaatgcggtatgtcg 156  Q
    |||||||||| ||||| ||||  |||||| ||||||||||| || |||||||||||||||| |||||| |||| || ||| |||||| |||||||| |||    
T  25484706 tgcactccaattataatttcaaattatttttccttatctttggttgaaaaccatatgcatgaaacacaataaagcacttgatcgaaattgcggtatatcg 25484805  T
Q  157 atgtttgtatgctctttgtcaaaatccatttgcacttttgcagtatgtcgaaata 211  Q
    | || |||||| |||| ||| ||||   ||| ||| ||||||| |||||||||||    
T  25484806 aagtctgtatgttcttggtcgaaatttctttacac-tttgcagcatgtcgaaata 25484859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 247
Target Start/End: Complemental strand, 36801970 - 36801901
Alignment:
Q  177 aaaatccatttgcacttttgcagtatgtcgaaatattttattattgatattatcaataagttaatcttcat 247  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  36801970 aaaattcatttgcacttt-gcagtatgtcgaaatattttattattggtattattaataagttaatcttcat 36801901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 1257839 - 1257700
Alignment:
Q  71 aacttcaggttatttctccttatctttagtcgaaaaccatatgcatgcaacacattaaatcatttggtcgaaaatgcggtatgtcgatgtttgtatgctc 170  Q
    |||||||| |||||||||||||||||| || |||| ||  |||| || |||| |||||| || ||||| |||||||||| |||||||  ||| |||||||    
T  1257839 aacttcagattatttctccttatctttggttgaaagccgcatgcttgaaacatattaaaacacttggttgaaaatgcggcatgtcgaattttatatgctc 1257740  T
Q  171 tttgtcaaaatccatttgcacttttgcagtatgtcgaaata 211  Q
    ||  || |||||| ||||||| ||||||| |||| ||||||    
T  1257739 ttgctcgaaatccgtttgcac-tttgcagcatgttgaaata 1257700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 43543729 - 43543806
Alignment:
Q  133 tttggtcgaaaatgcggtatgtcgatgtttgtatgctctttgtcaaaatccatttgcacttttgcagtatgtcgaaata 211  Q
    ||||||||||| |||||| |||||| || |||||| | || ||| |||||||||||||| |||||||  ||||||||||    
T  43543729 tttggtcgaaattgcggtgtgtcgaagtatgtatgttattggtcgaaatccatttgcac-tttgcagcctgtcgaaata 43543806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 211
Target Start/End: Complemental strand, 26049526 - 26049333
Alignment:
Q  17 acacttgacataattacaagacactagaaaataacttttatgcactccaactataacttcaggttatttctccttatctttagtcgaaaaccatatgcat 116  Q
    ||||||||||||||| |||||| |||||||| |||||| ||||||||||| | ||||||||  |||||| ||||||||| | ||||||||||||||||||    
T  26049526 acacttgacataattgcaagaccctagaaaacaactttcatgcactccaattgtaacttcaaattatttatccttatctctggtcgaaaaccatatgcat 26049427  T
Q  117 gcaacacattaaatcatttggtcgaaaatgcggtatgtcgatgtttgtatgctctttgtcaaaatccatttgcacttttgcagtatgtcgaaata 211  Q
    |||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| ||| ||||   ||||||| ||||||| |||||||||||    
T  26049426 gcaacacattaaatcacttggtcgaaattgcggtatgtcgaagtttgtatgctcttggtcgaaatatctttgcac-tttgcagcatgtcgaaata 26049333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 26 - 228
Target Start/End: Original strand, 16802918 - 16803119
Alignment:
Q  26 ataattacaagacactagaaaataacttttatgcactccaactataacttcaggttatttctccttatctttagtcgaaaaccatatgcatgcaacacat 125  Q
    |||||| ||||||||| |||||||||||  ||| ||| ||| | ||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||    
T  16802918 ataatttcaagacactggaaaataacttccatgtacttcaattgtaacttcagattatttatccttatctttagtcgaaaaccatatgcatgcaacatat 16803017  T
Q  126 taaatcatttggtcgaaaatgcggtatgtcgatgtttgtatgctctttgtcaaaatccatttgcacttttgcagtatgtcgaaatattttattattgata 225  Q
    ||||||| ||||||||||||  |||||||| | || ||||||||||| ||| |||||  ||||||| ||||||| |||||||||||||||||| ||| ||    
T  16803018 taaatcacttggtcgaaaatatggtatgtcaaagtctgtatgctcttggtcgaaatcactttgcac-tttgcagcatgtcgaaatattttatttttgcta 16803116  T
Q  226 tta 228  Q
    |||    
T  16803117 tta 16803119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 36729572 - 36729472
Alignment:
Q  57 tgcactccaactataacttcaggttatttctccttatctttagtcgaaaaccatatgcatgcaacacattaaatcatttggtcgaaaatgcggtatgtcg 156  Q
    |||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | ||||| |||  ||||||||||||    
T  36729572 tgcactccaattataacttcagattatttctccttatctttggtcgaaaaccatatgcatgcaacacattaagttacttggttgaagttgcggtatgtcg 36729473  T
Q  157 a 157  Q
    |    
T  36729472 a 36729472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 102 - 209
Target Start/End: Complemental strand, 26051540 - 26051434
Alignment:
Q  102 gaaaaccatatgcatgcaacacattaaatcatttggtcgaaaatgcggtatgtcgatgtttgtatgctctttgtcaaaatccatttgcacttttgcagta 201  Q
    |||||||| |||| ||||||||||||||||| |||||||||| ||| ||||||||| || ||||||||||| ||| |||||  ||||||| |||||| ||    
T  26051540 gaaaaccacatgcgtgcaacacattaaatcacttggtcgaaattgcagtatgtcgaagtctgtatgctcttggtcgaaatctttttgcac-tttgcaata 26051442  T
Q  202 tgtcgaaa 209  Q
    ||||||||    
T  26051441 tgtcgaaa 26051434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 20063057 - 20063124
Alignment:
Q  57 tgcactccaactataacttcaggttatttctccttatctttagtcgaaaa-ccatatgcatgcaacac 123  Q
    |||||| ||||| ||||||||| |||||||| ||| | ||| |||||||| |||||||||||||||||    
T  20063057 tgcacttcaactgtaacttcagattatttctacttgtgtttggtcgaaaaaccatatgcatgcaacac 20063124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 211
Target Start/End: Complemental strand, 375606 - 375421
Alignment:
Q  25 cataattacaagacactagaaaataacttttatgcactccaactataacttcaggttatttctccttatctttagtcgaaaaccatatgcatgcaacaca 124  Q
    ||||||||||||||||||||||| |||||  ||||| ||||| | ||||||||  |||||| ||||||||| |  |||||||||||||||||||||| ||    
T  375606 cataattacaagacactagaaaacaacttccatgcattccaattgtaacttcaaattatttatccttatctctgatcgaaaaccatatgcatgcaacgca 375507  T
Q  125 ttaaatcatttggtcgaaaatgcggtatgtcgatgtttgtatgctctttgtcaaaatccatttgcacttttgcagtatgtcgaaata 211  Q
    |||||||| ||| |||||| |||||||||||||  | ||||| ||||| ||| |||||  ||||||| ||||||| |||||||||||    
T  375506 ttaaatcacttgatcgaaattgcggtatgtcgaaatatgtatactcttggtcgaaatctctttgcac-tttgcagcatgtcgaaata 375421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 228
Target Start/End: Complemental strand, 411071 - 410904
Alignment:
Q  60 actccaactataacttcaggttatttctccttatctttagtcgaaaaccatatgcatgcaacacattaaatcatttggtcgaaaatgcggtatgtcgatg 159  Q
    ||||||| | |||||| || |||||  || || ||||| |||| |||||||||||||||||||||||||| || ||||||||||||| |||||||||| |    
T  411071 actccaattgtaacttaagattattcgtctttgtctttggtcgtaaaccatatgcatgcaacacattaaagcacttggtcgaaaatgtggtatgtcgaag 410972  T
Q  160 tttgtatgctctttgtcaaaatccatttgcacttttgcagtatgtcgaaatattttattattgatatta 228  Q
     || |||||||||  |  |||||  ||||||| ||||| ||||||  |||||||||||| ||| |||||    
T  410971 cttatatgctcttgattgaaatctttttgcac-tttgcggtatgtaaaaatattttatttttgctatta 410904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 33545764 - 33545620
Alignment:
Q  57 tgcactccaactataacttcaggttatttctccttatctttagtcgaaaa-ccatatgcatgcaacacattaaatcatttggtcgaaaatgcggtatgtc 155  Q
    |||||||||||| |||||| || |||||||| ||| | ||| |||||||| |||||||||||||||||          ||||||| || ||| |||||||    
T  33545764 tgcactccaactgtaactttagattatttctacttgtgtttggtcgaaaaaccatatgcatgcaacac----------ttggtcggaattgcagtatgtc 33545675  T
Q  156 gatgtttgtatgctctttgtcaaaatccatttgcacttttgcagtatgtcgaaata 211  Q
     | |||||||||||||| ||| |||||| ||||||| ||||||| |||||||||||    
T  33545674 aaagtttgtatgctcttggtcgaaatccctttgcac-tttgcagcatgtcgaaata 33545620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 411151 - 411109
Alignment:
Q  25 cataattacaagacactagaaaataacttttatgcactccaac 67  Q
    |||||||||||||||||||||||||||||  ||||||||||||    
T  411151 cataattacaagacactagaaaataacttacatgcactccaac 411109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 24412076 - 24411936
Alignment:
Q  17 acacttgacataattacaagacactagaaaataacttttatgcactccaactataacttcaggttatttctccttatctttagtcgaaaaccatatgcat 116  Q
    |||||||||||||||||||| || | |||||||| ||  || || ||||| | ||||||||  |||||||||||||||||| ||| ||||||||||||||    
T  24412076 acacttgacataattacaaggcattggaaaataatttccatccattccaattgtaacttcatattatttctccttatctttggtcaaaaaccatatgcat 24411977  T
Q  117 gcaacacattaaatcatttggtcgaaaatgcggtatgtcga 157  Q
    |||||||||||||||| ||| |||||| |||||||||||||    
T  24411976 gcaacacattaaatcacttgatcgaaattgcggtatgtcga 24411936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 57 - 183
Target Start/End: Original strand, 11087534 - 11087660
Alignment:
Q  57 tgcactccaactataacttcaggttatttctccttatctttagtcgaaaaccatatgcatgcaacacattaaatcatttggtcgaaaatgcggtatgtcg 156  Q
    |||||||||| ||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||| | |||| |    
T  11087534 tgcactccaattataacttcatattatttctccttatctatagtcgaaaaccatatgcatgcaacacattaaaacacttggtcgaaaatgcagaatgttg 11087633  T
Q  157 atgtttgtatgctctttgtcaaaatcc 183  Q
    | || | ||||||||| ||| ||||||    
T  11087634 aagtctatatgctcttagtcgaaatcc 11087660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 5555716 - 5555640
Alignment:
Q  134 ttggtcgaaaatgcggtatgtcgatgtttgtatgctctttgtcaaaatccatttgcacttttgcagtatgtcgaaata 211  Q
    |||||||||| ||| || |||||| || |||||| | || ||||||||||||||||| |||| ||| |||||||||||    
T  5555716 ttggtcgaaattgcagtgtgtcgaagtatgtatgttattggtcaaaatccatttgca-ttttacagcatgtcgaaata 5555640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 211
Target Start/End: Original strand, 12571470 - 12571542
Alignment:
Q  138 tcgaaaatgcggtatgtcgatgtttgtatgctctttgtcaaaatccatttgcacttttgcagtatgtcgaaata 211  Q
    |||||||||| | ||||||| || ||||||||||| ||| |||||  ||||||| ||||||| |||||||||||    
T  12571470 tcgaaaatgcagcatgtcgaagtctgtatgctcttggtcgaaatcactttgcac-tttgcagcatgtcgaaata 12571542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 1494660 - 1494507
Alignment:
Q  57 tgcactccaactataacttcaggttatttctccttatctttagtcgaaaaccatatgcatgcaacacattaaatcatttggtcgaaaatgcggtatgtcg 156  Q
    |||||||||| | ||||||||| ||||||||| || |||||  ||||||||| |||||||||||||||||||| || |||||||||||| | ||||||||    
T  1494660 tgcactccaattgtaacttcagattatttctcattgtctttgatcgaaaaccttatgcatgcaacacattaaaacacttggtcgaaaatacagtatgtcg 1494561  T
Q  157 atgtttgtatgctctttgtcaaaatccatttgcacttttgcagtatgtcgaaata 211  Q
    |  | ||||||||||| ||  |||||| ||||||| | || ||||||||||||||    
T  1494560 aaatctgtatgctcttagtagaaatccctttgcac-tgtgtagtatgtcgaaata 1494507  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 10735230 - 10735328
Alignment:
Q  57 tgcactccaactataacttcaggttatttctccttatctttagtcgaaaaccatatgcatgcaacacattaaatcatttggtcgaaaatgcggtatgtc 155  Q
    |||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||  |  |||| |||| |||||||||||    
T  10735230 tgcactccaattataacttcagattatttctccttatctttggtcgaaaaccatatgcatgcaacacattaaagtacatggttgaaattgcggtatgtc 10735328  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 157
Target Start/End: Complemental strand, 33270949 - 33270863
Alignment:
Q  71 aacttcaggttatttctccttatctttagtcgaaaaccatatgcatgcaacacattaaatcatttggtcgaaaatgcggtatgtcga 157  Q
    |||||||  |||||||||||| ||||| |||||||||||||||||||||||||||||| ||| |||||||||| |||||| ||||||    
T  33270949 aacttcaaattatttctccttgtctttggtcgaaaaccatatgcatgcaacacattaagtcacttggtcgaaattgcggtgtgtcga 33270863  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 194
Target Start/End: Complemental strand, 36394658 - 36394550
Alignment:
Q  86 ctccttatctttagtcgaaaaccatatgcatgcaacacattaaatcatttggtcgaaaatgcggtatgtcgatgtttgtatgctctttgtcaaaatccat 185  Q
    |||||||||||| ||| |||| ||| ||||||||| |||||||| ||||||||||||||||| |||| |||| || |||||||||||  || |||||| |    
T  36394658 ctccttatctttggtcaaaaatcatgtgcatgcaatacattaaaacatttggtcgaaaatgcagtatatcgaagtctgtatgctcttgatcgaaatccct 36394559  T
Q  186 ttgcacttt 194  Q
    || ||||||    
T  36394558 ttacacttt 36394550  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 33271028 - 33270983
Alignment:
Q  17 acacttgacataattacaagacactagaaaataacttttatgcact 62  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||    
T  33271028 acacttggcataattacaagacactagaaaataactttcatgcact 33270983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 31813282 - 31813205
Alignment:
Q  133 tttggtcgaaaatgcggtatgtcgatgtttgtatgctctttgtcaaaatccatttgcacttttgcagtatgtcgaaata 211  Q
    ||||||||||| |||||||| |||| || ||||||||||| ||| |||||  ||||||| ||||||  |||||||||||    
T  31813282 tttggtcgaaattgcggtatatcgaagtctgtatgctcttggtcgaaatctctttgcac-tttgcaacatgtcgaaata 31813205  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 66
Target Start/End: Complemental strand, 36394706 - 36394665
Alignment:
Q  25 cataattacaagacactagaaaataacttttatgcactccaa 66  Q
    ||||||||||| |||||||||||||||||  |||||||||||    
T  36394706 cataattacaaaacactagaaaataacttgcatgcactccaa 36394665  T

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Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 241047 - 240932
Alignment:
Q  57 tgcactccaactataacttcaggttatttctccttatctttagtcgaaaaccatatgcatgcaacacattaaatcatttggtcgaaaatgcggtatgtcg 156  Q
    |||||||||| |||||||||||  |||||||||||||||||  | |||||||||||||||| ||||||||||| |  |||||  ||||||| |||||| |    
T  241047 tgcactccaattataacttcagactatttctccttatctttgtttgaaaaccatatgcatgtaacacattaaagcccttggttaaaaatgcagtatgtag 240948  T
Q  157 atgtttgtatgctctt 172  Q
    | ||||| ||||||||    
T  240947 aagtttgcatgctctt 240932  T

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Target: scaffold0007 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 197853 - 197772
Alignment:
Q  71 aacttcaggttatttctccttatctttagtcgaaaaccatatgcatgcaacacattaaatcatttggtcgaaaatgcggtat 152  Q
    |||||||  |||||||||||| ||||| |||||||||||||||||||||||||||||| ||| |||||||||| || |||||    
T  197853 aacttcaaattatttctccttgtctttggtcgaaaaccatatgcatgcaacacattaagtcacttggtcgaaattgtggtat 197772  T

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Target: scaffold0007; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 198516 - 198466
Alignment:
Q  17 acacttgacataattacaagacactagaaaataacttttatgcactccaac 67  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  198516 acacttggcataattacaagacactagaaaataactttcatgcactccaac 198466  T

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Target: scaffold0007; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 197932 - 197882
Alignment:
Q  17 acacttgacataattacaagacactagaaaataacttttatgcactccaac 67  Q
    ||||||| ||||||| ||||||| |||||||||||||| ||||||| ||||    
T  197932 acacttggcataatttcaagacattagaaaataactttcatgcacttcaac 197882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 10377141 - 10377064
Alignment:
Q  133 tttggtcgaaaatgcggtatgtcgatgtttgtatgctctttgtcaaaatccatttgcacttttgcagtatgtcgaaata 211  Q
    ||||||||||| |||||| |||||| || |||||| | || ||| |||||||||||||| |||||||  ||||||||||    
T  10377141 tttggtcgaaattgcggtgtgtcgaagtatgtatgttattggtcgaaatccatttgcac-tttgcagcctgtcgaaata 10377064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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