View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16772_high_5 (Length: 466)
Name: NF16772_high_5
Description: NF16772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16772_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 22 - 440
Target Start/End: Original strand, 35409851 - 35410269
Alignment:
| Q |
22 |
tcaggggtgtttagtttaggccaccaggtagcatttttatgatcagggtgccccatgttgatgaattctttgtaccaggactggagttcattgtcagaag |
121 |
Q |
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| T |
35409851 |
tcaggggtgtttagtttaggccaccaggtagcatttttatgatcagggtgccccatgttgatgaattctttgtaccaggactggagttcattgtcagaag |
35409950 |
T |
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| Q |
122 |
aaacggcattcaaatctttgtagtaatggttcacataggtcctgaccaacttctctatactagtcca-atgagatggacatcatccgcataaggataatc |
220 |
Q |
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| T |
35409951 |
aaatggcattcaaatctttgtagtaatggttcacataggtcctgaccaacttctctatactagaccatatgaggagtccatcagccgcataaggataatc |
35410050 |
T |
|
| Q |
221 |
ttcaataagtagtctaatgccatgtggctgagtggcatctggaaccgccaaacctctgnnnnnnnngaaagaataaatagttagatcttatcttcttcac |
320 |
Q |
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| T |
35410051 |
ttcaataagtagtctaatgccatgtggccgagtggcatctggaaccgccaaacctctg-aaaaaaagaaagaataaatagttagatcttatcttcttcac |
35410149 |
T |
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| Q |
321 |
ttagtgaaagaacaaatgaaagaacaagtaaaaccaagctcattgcacagaaaactttgatgaaggaaactatcttctttaccttcttttaagatcggca |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35410150 |
ttagtgaaagaacaaatgaaagaacaagtaaaaccaagctcattgagcagaaaactttgatgaaggaaactatcttctttaccttcttttaagatcggca |
35410249 |
T |
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| Q |
421 |
ggaagaccttccatgtcaaa |
440 |
Q |
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| T |
35410250 |
ggaagaccttccatgtcaaa |
35410269 |
T |
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