View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16772_low_1 (Length: 870)

Name: NF16772_low_1
Description: NF16772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16772_low_1
NF16772_low_1
[»] chr8 (1 HSPs)
chr8 (11-854)||(8293007-8293827)


Alignment Details
Target: chr8 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 11 - 854
Target Start/End: Original strand, 8293007 - 8293827
Alignment:
Q  11 atcatcacacacttgagtattcaagacacatatcctcttgttcaattatctgcaagactttttatcttaatcaataaacaagttttttctctataaactc 110  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
T  8293007 atcatcccacacttgagtattcaagacacatatcctcttgttcaattatctgtaagactttt-atcttaatcaataaacaagttttttctctataaactc 8293105  T
Q  111 tttgaagtgcaatcaaatgaatgaatttgtaataaatccacgagtcatccaataattgttaaactattaagtaaaaacaaatatcacttgcatttattat 210  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||   |||||||||||     ||||||||||||||||||||||||||||||||||    
T  8293106 tttgaggtgcaatcaaataaatgaatttgtaataaatccacgagtca---aataattgtta-----ttaagtaaaaacaaatatcacttgcatttattat 8293197  T
Q  211 aaacaaaaactacttgcattcaaagtactnnnnnnntcactcaattttatacattttccataaatcacatcttgcacacag--ccaaattcattgcaggg 308  Q
    |||||||                 |||||       |||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||    
T  8293198 aaacaaa-----------------gtactaaaaaaatcactcaattttatacattttcgataaatcacatcttgcacacagagccaaattcattgcaggg 8293280  T
Q  309 tgcttaatnnnnnnntc-actgcagagtattaaacagataaaataaccaaatcaatagcaggaattatacattagcttaattttagtgtgaatcggctgc 407  Q
    ||||||||        | | ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8293281 tgcttaataaaaaaaaccattgcagagtattaaacagatgaaataaccaaatcaatagcaggaattatatattagcttaattttagtgtgaatcggctgc 8293380  T
Q  408 gcacaactgtaaagattaatgaataaaaaagtaaacacttaccgaaagtggcggtttcaaaggttggtgtgccgtcgatgtaattccggctaccggatac 507  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8293381 acacaactgtaaagattaatgaataaaaaagtaaacacttaccgaaagtggcggtttcaaaggttggtgtgccgtcgatgtaattccggctaccggatac 8293480  T
Q  508 gacggtttccgtcataccatcaccataaatcatcacattccatgtattcttatccaaatcaatattctctacatacacccctttcttcacatacaccaca 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8293481 gacggtttccgtcataccatcaccataaatcatcacattccatgtattcttatccaaatcaatattctctacatacacccctttcttcacatacaccaca 8293580  T
Q  608 aatctctgcagactcttcttcttcaccaacttcaacgcctcgcctattgtcttatactgtccacttccatccttcgccaccaccgcatccggcactgtct 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8293581 aatctctgcagactcttcttcttcaccaacttcaacgcctcgcctattgtcttatactgtccacttccatccttcgccaccaccgcatccggcactgttt 8293680  T
Q  708 cattcacaaccgtcgcaagcagcctcctctctgccgttcccaaccactccggaaactctccgagcaacctaattggtaacaataacaataattagtatac 807  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8293681 cattcaccaccgtcgcaagcagcctcctctctgccgttcccaaccactccggaaactctccgagcaacctaattggtaacaataacaataattagtatac 8293780  T
Q  808 aacaacgcttatacatcaaattaacaatgcttattagattactcttc 854  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||    
T  8293781 aacaacgcttatacatcaaattagcaatgcttactagattactcttc 8293827  T

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