View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16772_low_10 (Length: 363)
Name: NF16772_low_10
Description: NF16772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16772_low_10 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 2 - 363
Target Start/End: Original strand, 4996069 - 4996443
Alignment:
| Q |
2 |
tctttccaaccattaacttttgtttcttttctttcaaaatctaccatgctgcattagtggttggaaattgaaatagattagagtacataaattaaatgtc |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4996069 |
tctttccaaccattaacttttgtttcttttctttcaaaatctaccatgctgcattagtggttggaaattgaaatagattagagtacataaattaaatgtc |
4996168 |
T |
|
| Q |
102 |
attttcctttctttagaatgcaccattccttattctcctaagcaaaatattcttactgtagccacctat-------------tacaaaaatcacaaacaa |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4996169 |
attttcctttctttagaatgcaccattccttattctcctaagcaaaatattcttactgtagccacctatactatagctctattacaaaaatcacaaacaa |
4996268 |
T |
|
| Q |
189 |
agagacaataacatagtcaacatgttcatcaaatcatctccaaaatgtttcacatctctctctagtactatacaaatttcataggttgtccaaatttctt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4996269 |
agagacaataacatagtcaacatgttcatcaaatcatctccaaaatgtttcacatctctctctagtactatacaaatttcataggttgtccaaatttctt |
4996368 |
T |
|
| Q |
289 |
aaccttatcctatccccaagaatgattcttcttctggaagtaataatgctttaccccttacactctacctttggc |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4996369 |
aaccttatcctatccccaagaatgattcttcttctggaagtaataatgctttaccccttacactctacctttggc |
4996443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University