View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16772_low_11 (Length: 357)
Name: NF16772_low_11
Description: NF16772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16772_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 7 - 349
Target Start/End: Complemental strand, 20401486 - 20401144
Alignment:
| Q |
7 |
taaaggaggaggtggtggattgaagcttggtaagacaggagactcagaatgtccagttactgtcctacaagatttttctgaggttgttagaggctttcca |
106 |
Q |
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| T |
20401486 |
taaaggaggaggtggtggattgaagcttggtaaaacaggagactcagaatgtccagttactgtcatacaagatttttctgaggttgttagaggctttcca |
20401387 |
T |
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| Q |
107 |
gttagatttatcattcgagtaagacgtggtgtcatctttacaactgacgaagtagatattgagtttgttaagaaaccaaagtgtgctgaatctgcaaaat |
206 |
Q |
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| T |
20401386 |
gttaggtttatcattcgagtaagacgtggtgtcatctttacaactgacgaactagatattgagtttgttaagaaaccaaagtgtgctgaatctgcaaaat |
20401287 |
T |
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| Q |
207 |
gggttctagctcatgatgatttccctacatcttgggtaggtattggtgataatattgatgcatttcaaggtaaatttaaaattgagacacttggttcagg |
306 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20401286 |
gggttctagctcatgatgacttccctacatcttgggtaggtattggtgataatattgatgcatttcaaggtaaatttaaaattgagacacttggttcagg |
20401187 |
T |
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| Q |
307 |
atcaggagcatacaagcttgtgtattgtccattgttctgtgct |
349 |
Q |
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| T |
20401186 |
atcaggagcatacaagcttgtgtattgtccattgttcagtgct |
20401144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 349
Target Start/End: Complemental strand, 20433713 - 20433371
Alignment:
| Q |
7 |
taaaggaggaggtggtggattgaagcttggtaagacaggagactcagaatgtccagttactgtcctacaagatttttctgaggttgttagaggctttcca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
20433713 |
taaaggaggaggtggtggattgaagcttggtaagacaggagactcagaatgtccagttactgtcctacaagatttttctgaggttgttagaggcttacca |
20433614 |
T |
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| Q |
107 |
gttagatttatcattcgagtaagacgtggtgtcatctttacaactgacgaagtagatattgagtttgttaagaaaccaaagtgtgctgaatctgcaaaat |
206 |
Q |
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| T |
20433613 |
gttagatttaccataatagtaaaacgtggtgtcatctttacaactgatgaagtagatattgagtttgttaagaaaccaaagtgtgctgaatctgccaaat |
20433514 |
T |
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| Q |
207 |
gggttctagctcatgatgatttccctacatcttgggtaggtattggtgataatattgatgcatttcaaggtaaatttaaaattgagacacttggttcagg |
306 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
20433513 |
gggtgcttgctcatgatgatttccctacatcttgggtaggtattggtgataatattgatgcttttcaaggtaaatttaaaattgagacacttggttcagg |
20433414 |
T |
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| Q |
307 |
atcaggagcatacaagcttgtgtattgtccattgttctgtgct |
349 |
Q |
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| T |
20433413 |
atcaggagcatacaagcttgtgtattgtccattgttcagtgct |
20433371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 24222340 - 24222264
Alignment:
| Q |
17 |
ggtggtggattgaagcttggtaagacaggagactcagaatgtccagttactgtcctacaagatttttctgaggttgt |
93 |
Q |
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||||||||||||| ||||||||||||| | ||||| |||||||| ||||||| || ||||||| |||||||||||| |
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| T |
24222340 |
ggtggtggattgaggcttggtaagacaaaaaactcaaaatgtccacttactgtacttcaagattattctgaggttgt |
24222264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 24275278 - 24275214
Alignment:
| Q |
16 |
aggtggtggattgaagcttggtaagacaggagactcagaatgtccagttactgtcctacaagatt |
80 |
Q |
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|||||||||||||| ||||| |||||| ||| ||||| |||||||| ||||||| || ||||||| |
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| T |
24275278 |
aggtggtggattgaggcttgctaagactggaaactcaaaatgtccatttactgtacttcaagatt |
24275214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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