View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16772_low_12 (Length: 353)

Name: NF16772_low_12
Description: NF16772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16772_low_12
NF16772_low_12
[»] chr4 (6 HSPs)
chr4 (1-335)||(56376291-56376631)
chr4 (58-144)||(5124522-5124608)
chr4 (60-116)||(46078569-46078625)
chr4 (163-233)||(1394115-1394185)
chr4 (58-111)||(49407017-49407070)
chr4 (58-110)||(37856912-37856964)
[»] chr5 (2 HSPs)
chr5 (150-281)||(29985370-29985501)
chr5 (83-132)||(40151848-40151897)
[»] chr3 (4 HSPs)
chr3 (58-121)||(10346426-10346489)
chr3 (252-286)||(29237161-29237195)
chr3 (248-285)||(25131177-25131214)
chr3 (45-121)||(27527460-27527536)
[»] chr8 (3 HSPs)
chr8 (58-111)||(11911328-11911381)
chr8 (196-263)||(11911448-11911515)
chr8 (196-233)||(8079376-8079413)
[»] chr1 (8 HSPs)
chr1 (81-286)||(25396222-25396431)
chr1 (159-235)||(44839904-44839980)
chr1 (58-121)||(2114462-2114525)
chr1 (48-121)||(3601150-3601223)
chr1 (196-275)||(9782568-9782647)
chr1 (58-121)||(17321981-17322044)
chr1 (58-106)||(12539237-12539285)
chr1 (58-110)||(40610044-40610096)
[»] chr7 (4 HSPs)
chr7 (58-111)||(36677733-36677786)
chr7 (199-263)||(8321233-8321297)
chr7 (196-280)||(712225-712309)
chr7 (58-110)||(9451577-9451629)
[»] chr2 (1 HSPs)
chr2 (156-285)||(12555403-12555532)
[»] scaffold0151 (1 HSPs)
scaffold0151 (58-110)||(21293-21345)


Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 56376631 - 56376291
Alignment:
Q  1 aacatgtgttttaagtatttaaaaagatctgcattaatataaatattttt--gactttattttaaggaagcaattcattccatttcattagataaaatgt 98  Q
    ||||||||| ||||| ||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  56376631 aacatgtgtcttaaggatttaaaaaaatctgcattaatataaatatttttttgactttattttaaggaagcaattcattccatttcattagataaaatgt 56376532  T
Q  99 atcaaatacatgatggtagatcaatgtaagtgtgggagatagcatt----gaggttacctaagttaactcatgaacgactctattaacttgctttctatg 194  Q
    || |||||||||||||||||||| |||||||||||||||||| |||    |||| ||||||||||||||||||||||| ||||||| ||||||| || ||    
T  56376531 attaaatacatgatggtagatcagtgtaagtgtgggagatagtattatatgaggctacctaagttaactcatgaacgattctattagcttgcttcctgtg 56376432  T
Q  195 taactcgacatgagagttttgaaaactattattaaacaattatttagaggcaaatataatacaaccaaatttactattatcttctatatctagagcaaag 294  Q
    |||||||||||||||||| ||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  56376431 taactcgacatgagagttctgaaaactattatcaaaaaattgtttagaggcagatataatacaaccaaatttactattatcttttatatctagagcaaag 56376332  T
Q  295 tcaacattatcaaattgaagaccggctatccattccaatgt 335  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  56376331 tcaacattatcaaattgaaggctggctatccattccaatgt 56376291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 5124522 - 5124608
Alignment:
Q  58 ttttaaggaagcaattcattccatttcattagataaaatgtatcaaatacatgatggtagatcaatgtaagtgtgggagatagcatt 144  Q
    |||||||||||||| |||||  |||||||||| |||||||| |||||||||| ||||   |||| ||||| |||||||  |||||||    
T  5124522 ttttaaggaagcaaatcattgtatttcattagttaaaatgtgtcaaatacataatggcctatcattgtaaatgtgggatctagcatt 5124608  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 46078625 - 46078569
Alignment:
Q  60 ttaaggaagcaattcattccatttcattagataaaatgtatcaaatacatgatggta 116  Q
    ||||| ||| |||||||| ||||||||||| |||||||| |||||||||||| ||||    
T  46078625 ttaagaaagaaattcattgcatttcattagctaaaatgtgtcaaatacatgaaggta 46078569  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 1394185 - 1394115
Alignment:
Q  163 tcatgaacgactctattaacttgctttctatgtaactcgacatgagagttttgaaaactattattaaacaa 233  Q
    ||||||||||| | |||| ||||| | ||||  ||||||||||||||||| ||||||||||| | ||||||    
T  1394185 tcatgaacgaccccattagcttgcctcctattgaactcgacatgagagttctgaaaactattgtcaaacaa 1394115  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 49407017 - 49407070
Alignment:
Q  58 ttttaaggaagcaattcattccatttcattagataaaatgtatcaaatacatga 111  Q
    ||||||||||| ||||| || ||||||||||| |||||||| ||||||| ||||    
T  49407017 ttttaaggaagaaattcgttgcatttcattagttaaaatgtgtcaaatatatga 49407070  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 37856912 - 37856964
Alignment:
Q  58 ttttaaggaagcaattcattccatttcattagataaaatgtatcaaatacatg 110  Q
    ||||||||||  |||||||| ||||||||||| |||||| | |||||||||||    
T  37856912 ttttaaggaataaattcattgcatttcattaggtaaaatatttcaaatacatg 37856964  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 281
Target Start/End: Complemental strand, 29985501 - 29985370
Alignment:
Q  150 tacctaagttaactcatgaacgactctattaacttgctttctatgtaactcgacatgagagttttgaaaactattattaaacaattatttagaggcaaat 249  Q
    ||||| || |||||| ||||||||   |||| ||||  ||||||  ||||||||||||||||| ||| | |||| ||  ||||| | |||| || || ||    
T  29985501 tacctgagctaactcgtgaacgacctcattagcttgtcttctattgaactcgacatgagagttctgatacctatgatggaacaagtttttacagtcagat 29985402  T
Q  250 ataatacaaccaaatttactattatcttctat 281  Q
    |||||||||||||||| |||||||||||||||    
T  29985401 ataatacaaccaaattcactattatcttctat 29985370  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 40151848 - 40151897
Alignment:
Q  83 tcattagataaaatgtatcaaatacatgatggtagatcaatgtaagtgtg 132  Q
    |||||||||||||||| |||||||||| ||| || |||||||||| ||||    
T  40151848 tcattagataaaatgtgtcaaatacattatgatacatcaatgtaaatgtg 40151897  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 10346426 - 10346489
Alignment:
Q  58 ttttaaggaagcaattcattccatttcattagataaaatgtatcaaatacatgatggtagatca 121  Q
    ||||||||||| |||||||| ||||||||||| |||||||| |||||||||||| |||| ||||    
T  10346426 ttttaaggaagaaattcattgcatttcattagctaaaatgtgtcaaatacatgagggtacatca 10346489  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 286
Target Start/End: Complemental strand, 29237195 - 29237161
Alignment:
Q  252 aatacaaccaaatttactattatcttctatatcta 286  Q
    |||||||||||||| ||||||||||||||||||||    
T  29237195 aatacaaccaaattcactattatcttctatatcta 29237161  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 25131177 - 25131214
Alignment:
Q  248 atataatacaaccaaatttactattatcttctatatct 285  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  25131177 atataatacaaccaaattcactattatcctctatatct 25131214  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 27527536 - 27527460
Alignment:
Q  45 atttttgactttattttaaggaagcaattcattccatttcattagataaaatgtatcaaatacatgatggtagatca 121  Q
    |||||| ||||| ||| |||||| ||| ||| | ||||||| |||||||||| | |||||||||||| |||| ||||    
T  27527536 attttttactttttttgaaggaaacaaatcaattcatttcaatagataaaatttgtcaaatacatgacggtacatca 27527460  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 11911328 - 11911381
Alignment:
Q  58 ttttaaggaagcaattcattccatttcattagataaaatgtatcaaatacatga 111  Q
    ||||||||||| |||||||| ||||||||||| ||||||||| |||||||||||    
T  11911328 ttttaaggaagaaattcattgcatttcattagctaaaatgtaccaaatacatga 11911381  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 11911448 - 11911515
Alignment:
Q  196 aactcgacatgagagttttgaaaactattattaaacaattatttagaggcaaatataatacaaccaaa 263  Q
    |||||||||||||||||||||||||||||| | ||| ||| | || |  ||||||| |||||||||||    
T  11911448 aactcgacatgagagttttgaaaactattaattaactattgtctacatacaaatatgatacaaccaaa 11911515  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 8079376 - 8079413
Alignment:
Q  196 aactcgacatgagagttttgaaaactattattaaacaa 233  Q
    |||||||||||||||||||||||||||| || ||||||    
T  8079376 aactcgacatgagagttttgaaaactatcatgaaacaa 8079413  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 286
Target Start/End: Original strand, 25396222 - 25396431
Alignment:
Q  81 tttcattagataaaatgtatcaaatacatgatggtagatcaatgtaagtgtgggagatagca----ttgaggttacctaagttaactcatgaacgactct 176  Q
    ||||||||| || ||||| || |||||||||||||| |||| ||||| |||||||| |||||    || ||| ||| | || |||||  ||||||||       
T  25396222 tttcattagctacaatgtgtctaatacatgatggtacatcagtgtaaatgtgggagctagcatgacttaaggctacatgagctaacttgtgaacgacctc 25396321  T
Q  177 attaacttgctttctatgtaactcgacatgagagttttgaaaactattattaaacaattatttagaggcaaatataatacaaccaaatttactattatct 276  Q
    |||||| ||| ||||||  || | ||||| |||||| ||| |  ||||||  ||||| | | || | ||| ||||||||||| |||||| ||||||||||    
T  25396322 attaacctgccttctattgaatttgacataagagttctgatacttattatggaacaagtttatacaagcagatataatacaatcaaattcactattatct 25396421  T
Q  277 tctatatcta 286  Q
    ||||||||||    
T  25396422 tctatatcta 25396431  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 44839904 - 44839980
Alignment:
Q  159 taactcatgaacgactctattaacttgctttctatgtaactcgacatgagagttttgaaaactattattaaacaatt 235  Q
    |||||||||| |||| | |||||||||| | ||||  ||||||||||||||||| ||||||||||| | ||||||||    
T  44839904 taactcatgagcgaccccattaacttgcctcctattgaactcgacatgagagttctgaaaactattgtcaaacaatt 44839980  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 2114525 - 2114462
Alignment:
Q  58 ttttaaggaagcaattcattccatttcattagataaaatgtatcaaatacatgatggtagatca 121  Q
    ||||||||||| |||||||| ||||||||||| ||||||||  ||||||||| | |||||||||    
T  2114525 ttttaaggaagaaattcattgcatttcattagttaaaatgtgccaaatacataaaggtagatca 2114462  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 3601150 - 3601223
Alignment:
Q  48 tttgactttattttaaggaagcaattcattccatttcattagataaaatgtatcaaatacatgatggtagatca 121  Q
    ||||| ||| ||||||||||| |||||||| |||| |||||| |||||| | |||||||||||| |||| ||||    
T  3601150 tttgaattttttttaaggaagaaattcattgcattccattagctaaaatatgtcaaatacatgaaggtacatca 3601223  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 275
Target Start/End: Original strand, 9782568 - 9782647
Alignment:
Q  196 aactcgacatgagagttttgaaaactattattaaacaattatttagaggcaaatataatacaaccaaatttactattatc 275  Q
    |||| |||||||||||| |||||||||||||  | ||||| |||| || || |||||||||||  ||||| |||||||||    
T  9782568 aacttgacatgagagttatgaaaactattatgtagcaattgtttatagacatatataatacaaaaaaattcactattatc 9782647  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 17322044 - 17321981
Alignment:
Q  58 ttttaaggaagcaattcattccatttcattagataaaatgtatcaaatacatgatggtagatca 121  Q
    ||||||||||| |||||||| || |||||||| |||||||| ||| |||||||| |||| ||||    
T  17322044 ttttaaggaagaaattcattgcaattcattagctaaaatgtgtcacatacatgagggtacatca 17321981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 12539285 - 12539237
Alignment:
Q  58 ttttaaggaagcaattcattccatttcattagataaaatgtatcaaata 106  Q
    ||||||||||| |||||||| ||||||||||| |||||| | |||||||    
T  12539285 ttttaaggaagaaattcattgcatttcattagctaaaatatgtcaaata 12539237  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 40610096 - 40610044
Alignment:
Q  58 ttttaaggaagcaattcattccatttcattagataaaatgtatcaaatacatg 110  Q
    ||||||||||| || ||||| ||||||||||| |||||| | |||||||||||    
T  40610096 ttttaaggaagaaaatcattacatttcattagctaaaatatgtcaaatacatg 40610044  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 36677786 - 36677733
Alignment:
Q  58 ttttaaggaagcaattcattccatttcattagataaaatgtatcaaatacatga 111  Q
    ||||||||||| |||| ||| ||||||||||| |||||||| ||||||||||||    
T  36677786 ttttaaggaagaaatttattgcatttcattagctaaaatgtgtcaaatacatga 36677733  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 8321233 - 8321297
Alignment:
Q  199 tcgacatgagagttttgaaaactattattaaacaattatttagaggcaaatataatacaaccaaa 263  Q
    |||||||||||||||||||| |||| || |||||||| |||| |||||   ||||||||||||||    
T  8321233 tcgacatgagagttttgaaatctatcataaaacaattgtttataggcattaataatacaaccaaa 8321297  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 280
Target Start/End: Complemental strand, 712309 - 712225
Alignment:
Q  196 aactcgacatgagagttttgaaaactattattaaacaattatttagaggcaaatataatacaaccaaatttactattatcttcta 280  Q
    ||||| ||||||||||||| ||| ||||| | |||||| ||| || | |||| ||||||||| ||||||| || | |||||||||    
T  712309 aactcaacatgagagttttaaaatctattttgaaacaactatctacatgcaagtataatacatccaaattcacaactatcttcta 712225  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 110
Target Start/End: Complemental strand, 9451629 - 9451577
Alignment:
Q  58 ttttaaggaagcaattcattccatttcattagataaaatgtatcaaatacatg 110  Q
    ||||||||||| |||| ||| ||||||||||| |||||| | |||||||||||    
T  9451629 ttttaaggaagaaattaattgcatttcattaggtaaaatatgtcaaatacatg 9451577  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 285
Target Start/End: Original strand, 12555403 - 12555532
Alignment:
Q  156 agttaactcatgaacgactctattaacttgctttctatgtaactcgacatgagagttttgaaaactattattaaacaattatttagaggcaaatataata 255  Q
    ||||||||| | | |||| | |||||||||| | ||||  |||| |||||||||||| |||||||| ||||  ||||| | | || |  |||||||||||    
T  12555403 agttaactcgtaagcgaccccattaacttgcctcctattgaacttgacatgagagttctgaaaactgttatgtaacaactgtctacaatcaaatataata 12555502  T
Q  256 caaccaaatttactattatcttctatatct 285  Q
    |||||||| |  |||||||| |||||||||    
T  12555503 caaccaaactcgctattatcatctatatct 12555532  T

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Target: scaffold0151 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 21293 - 21345
Alignment:
Q  58 ttttaaggaagcaattcattccatttcattagataaaatgtatcaaatacatg 110  Q
    |||||| |||| |||||||| ||||||||||| |||||||| |||||||||||    
T  21293 ttttaatgaagaaattcattgcatttcattagctaaaatgtgtcaaatacatg 21345  T

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