View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16772_low_13 (Length: 307)
Name: NF16772_low_13
Description: NF16772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16772_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 2095563 - 2095854
Alignment:
| Q |
1 |
agaacaatacatgcatgaaagtaccttgagtgtgtcaccaacaatgacaacaaagcctccctgcggtatgttcaatctaatccattggtttgttttagta |
100 |
Q |
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| T |
2095563 |
agaacaatacatgcatgaaagtaccttgagtgtgtcaccaacaatgacaacaaagcctccctgcggtatgttcaatctaatccattggtttgttttagta |
2095662 |
T |
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| Q |
101 |
agaacctcaagaccttggacttcattttggcataaagtggttaaggtatttttgtcagtgtgagatactaaggcagtttcataatctttgttgatttcag |
200 |
Q |
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| T |
2095663 |
agaacctcaagaccttggacttcattttggcataaagtggttaaggtatttttgtcagtgtgagatactaaggcagtttcataatctttgttgatttcag |
2095762 |
T |
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| Q |
201 |
gaactttgtatttcatcaatcgaaaactactacggctcttcaattcttcaatggttgaagtgtattgttttggaacaccataaccatctatg |
292 |
Q |
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| T |
2095763 |
gaactttgtatttcatcaatcgaaaactactacggctcttcaattcttcaatggttgaagtgtattgttttggaagaccataaccatctatg |
2095854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 5 - 275
Target Start/End: Complemental strand, 12461238 - 12460968
Alignment:
| Q |
5 |
caatacatgcatgaaagtaccttgagtgtgtcaccaacaatgacaacaaagcctccctgcggtatgttcaatctaatccattggtttgttttagtaagaa |
104 |
Q |
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||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||| |
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| T |
12461238 |
caatacatgcatgaaagaaccttgagtatgtcaccaacaaagacaacaaagcctccttggggtatgttcaatttaatccattggtttgttttagtaagaa |
12461139 |
T |
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| Q |
105 |
cctcaagaccttggacttcattttggcataaagtggttaaggtatttttgtcagtgtgagatactaaggcagtttcataatctttgttgatttcaggaac |
204 |
Q |
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| T |
12461138 |
cctcaagaccttgaacttcattttggcataaaatggttaaggtagttttgtcggtgtgaggtgccaagccaattccacaatctttgttgatttcaggaac |
12461039 |
T |
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| Q |
205 |
tttgtatttcatcaatcgaaaactactacggctcttcaattcttcaatggttgaagtgtattgttttggaa |
275 |
Q |
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| T |
12461038 |
tctgtatttcatcaatcgcaaattacaattgcccttcaattcttcaatagttgaattgaattgttttggaa |
12460968 |
T |
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