View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16772_low_14 (Length: 307)
Name: NF16772_low_14
Description: NF16772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16772_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 11002134 - 11002413
Alignment:
| Q |
18 |
tcaccaaaaagctacaaaacccatcaaggatcttcatatgcctcttaaaattcctgggttaccaaagaatttttcgacagacgattaccccgatgaagct |
117 |
Q |
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| T |
11002134 |
tcaccaaaaagctacaaaacccatcaaggatcttcatatgcctcttaaaattcccgggttaccaaagaacttttcgacagacgattaccccgatgaagct |
11002233 |
T |
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| Q |
118 |
aaggattctgagagtaaaggttgcaagattttgcttgattcggcgaaaacaatgagggaatgtgctgggattattgtgaacacttttgatgctattgaag |
217 |
Q |
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| T |
11002234 |
aaggattctgagagtaaaggttgcaagattttgcttgattcggcgaaaacaatgagggaatgtgctgggattattgtgaacacttttgatgctattgaag |
11002333 |
T |
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| Q |
218 |
aaaaagctattaaaggtttgaatgaaggggtatgtgttcctgatggaacaactccatccattttttgtattggacctttg |
297 |
Q |
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| T |
11002334 |
aaaaagctattaaaggtttgaatgaaggggtatgtgttcctgatggaacaactccatccattttttgtattggacctttg |
11002413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 146 - 293
Target Start/End: Original strand, 10968082 - 10968229
Alignment:
| Q |
146 |
ttttgcttgattcggcgaaaacaatgagggaatgtgctgggattattgtgaacacttttgatgctattgaagaaaaagctattaaaggtttgaatgaagg |
245 |
Q |
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| T |
10968082 |
ttttccttgaatcggcaaaaactatgaggcaatgtgatggggttattgtgaacacttttgatgctattgagggaaaagctaataaagctttgaatgaagg |
10968181 |
T |
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| Q |
246 |
ggtatgtgttcctgatggaacaactccatccattttttgtattggacc |
293 |
Q |
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| T |
10968182 |
attatatattcctgatggaactactccatccattttttgtattggacc |
10968229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 297
Target Start/End: Original strand, 10981906 - 10982183
Alignment:
| Q |
23 |
aaaaagctacaaaacccatcaaggatcttcatatgcctcttaaaattcctgggttaccaaagaatttttcgacagacgattaccccgatgaagctaagga |
122 |
Q |
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| T |
10981906 |
aaaatgctacaaaacctattaaggatcttcatatgcctcttcaaattccagggttaccaaagagtctttcaacagatgattaccctgacggattcaatga |
10982005 |
T |
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| Q |
123 |
ttct------gagagtaaag-gttgcaagattttgcttgattcggcgaaaacaatgagggaatgtgctgggattattgtgaacacttttgatgctattga |
215 |
Q |
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| T |
10982006 |
ttctatttctgagaataaagtgttacaagatat-gcttgattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattga |
10982104 |
T |
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| Q |
216 |
agaaaaagctattaaaggtttgaatgaaggggtatgtgttcctgatggaacaactccatccattttttgtattggacctttg |
297 |
Q |
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| T |
10982105 |
aggaagagcaattaaagctttgaatgaaggattatttattcctgatgg---tattccatccattttctgtactggacctttg |
10982183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 10967978 - 10968076
Alignment:
| Q |
18 |
tcaccaaaaagctacaaaacccatcaaggatcttcatatgcctcttaaaattcctgggttaccaaagaatttttcgacagacgattaccccgatgaagc |
116 |
Q |
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| T |
10967978 |
tcaccaaaatgctacaaaacccattaaggatctccatacgcctcttcgaattcctgggttaccaaaaaatatttcaacagatgattaccctgatgaagc |
10968076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 232
Target Start/End: Original strand, 11079429 - 11079489
Alignment:
| Q |
172 |
agggaatgtgctgggattattgtgaacacttttgatgctattgaagaaaaagctattaaag |
232 |
Q |
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| T |
11079429 |
agggaaagtgatgggattatcgtaaacactttcgatgctattgaaaagaaagctattaaag |
11079489 |
T |
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