View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16772_low_18 (Length: 284)

Name: NF16772_low_18
Description: NF16772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16772_low_18
NF16772_low_18
[»] chr2 (6 HSPs)
chr2 (14-264)||(16230307-16230558)
chr2 (101-268)||(34688162-34688329)
chr2 (101-268)||(34710574-34710741)
chr2 (13-160)||(28914029-28914176)
chr2 (10-78)||(34688099-34688167)
chr2 (10-78)||(34710511-34710579)
[»] chr3 (1 HSPs)
chr3 (184-261)||(46519777-46519855)


Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 264
Target Start/End: Original strand, 16230307 - 16230558
Alignment:
Q  14 tgagatcttgaaccaatgcacggattacctccacgcaagtcatccacaatctctgtatagtgctgttcttttggaacgggatcaagtgcgctgaaataca 113  Q
    ||||||| |||||||||||| |||| |||||||||| ||||||||||||||||||||||||  |||||||||||||| ||||||||||| ||||||||||    
T  16230307 tgagatcctgaaccaatgcatggatcacctccacgcgagtcatccacaatctctgtatagttttgttcttttggaacaggatcaagtgcactgaaataca 16230406  T
Q  114 agatttccaccatatccacatcacagcatactccaccaggctcctgaagaaaattgctactggtttgaaatccaggatgcaatatcttgacatggat-ta 212  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |     
T  16230407 agatttccaccatatccacatcacaccatactccaccaggcccctgaagaaaattgccactggtttgaaatccaggatgcaatatctcgacatggatctt 16230506  T
Q  213 attcctactgagggagaggatatgcaaggcataactgaatttgaccacgaca 264  Q
    | ||||||||  ||| ||||||||||||||||||||||||| ||||||||||    
T  16230507 actcctactggtggaaaggatatgcaaggcataactgaattcgaccacgaca 16230558  T

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Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 101 - 268
Target Start/End: Original strand, 34688162 - 34688329
Alignment:
Q  101 gcgctgaaatacaagatttccaccatatccacatcacagcatactccaccaggctcctgaagaaaattgctactggtttgaaatccaggatgcaatatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34688162 gcgctgaaatacaagatttccaccatatccacatcacagcatactccaccaggctcctgaagaaaattgctcctggtttgaaatccaggatgcaatatct 34688261  T
Q  201 tgacatggattaattcctactgagggagaggatatgcaaggcataactgaatttgaccacgacacttg 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34688262 tgacatggattaattcctactgagggagaggatatgcaaggcataactgaatttgaccacgacacttg 34688329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 101 - 268
Target Start/End: Original strand, 34710574 - 34710741
Alignment:
Q  101 gcgctgaaatacaagatttccaccatatccacatcacagcatactccaccaggctcctgaagaaaattgctactggtttgaaatccaggatgcaatatct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34710574 gcgctgaaatacaagatttccaccatatccacatcacagcatactccaccaggctcctgaagaaaattgctcctggtttgaaatccaggatgcaatatct 34710673  T
Q  201 tgacatggattaattcctactgagggagaggatatgcaaggcataactgaatttgaccacgacacttg 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34710674 tgacatggattaattcctactgagggagaggatatgcaaggcataactgaatttgaccacgacacttg 34710741  T

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Target: chr2; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 28914029 - 28914176
Alignment:
Q  13 ctgagatcttgaaccaatgcacggattacctccacgcaagtcatccacaatctctgtatagtgctgttcttttggaacgggatcaagtgcgctgaaatac 112  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||| |||| |  |||||     
T  28914029 ctgagatcctgaaccaatgcacggatcacctccacgcaagtcatccacaatctctgtatagtgttgttctttcggaactggttcaggtgcaccaaaatat 28914128  T
Q  113 aagatttccaccatatccacatcacagcatactccaccaggctcctga 160  Q
     ||| |||||||| ||| |||||||| ||||||||||||||| |||||    
T  28914129 gagaattccaccacatctacatcacaccatactccaccaggcccctga 28914176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 34688099 - 34688167
Alignment:
Q  10 catctgagatcttgaaccaatgcacggattacctccacgcaagtcatccacaatctctgtatagtgctg 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  34688099 catctgagatcttgaaccaatgcacggattacctccacgcaagtcatccacaatctccgtatagcgctg 34688167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 34710511 - 34710579
Alignment:
Q  10 catctgagatcttgaaccaatgcacggattacctccacgcaagtcatccacaatctctgtatagtgctg 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  34710511 catctgagatcttgaaccaatgcacggattacctccacgcaagtcatccacaatctccgtatagcgctg 34710579  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 184 - 261
Target Start/End: Original strand, 46519777 - 46519855
Alignment:
Q  184 tccaggatgcaatatcttgacatggatta-attcctactgagggagaggatatgcaaggcataactgaatttgaccacg 261  Q
    ||||||||||||||||| |||||||||   ||||||||| | ||||||||||| ||||||| |||||||||||||||||    
T  46519777 tccaggatgcaatatctcgacatggatcctattcctactaatggagaggatatacaaggcagaactgaatttgaccacg 46519855  T

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