View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16772_low_2 (Length: 588)
Name: NF16772_low_2
Description: NF16772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16772_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 15 - 574
Target Start/End: Complemental strand, 13148220 - 13147652
Alignment:
| Q |
15 |
aagttttcctcttcaatatcaataattcaaggaattagcatgttaaaaagttgtaatgagattccaaataagttagctttggtttatgcaatcactttta |
114 |
Q |
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| T |
13148220 |
aagttttcctcttcaatatcaataattcaaggaattagcatgttaaaaagttgtaatgagattccaaataagttagctttggtttatgcaatcactttta |
13148121 |
T |
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| Q |
115 |
gtgctttaccctgtatttaacatacatagggtattttagagctagcttcactttcccattgtgataaaattccacctttttagtagtacattgataatgg |
214 |
Q |
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| T |
13148120 |
gtgctttaccctgtatttaacatacatagggtattttagagctagcttcactttcccattgtgataaaattccacctttttagtagtacattgataatgg |
13148021 |
T |
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| Q |
215 |
aaagttgttgccaaaaatccatgtggattcaaagtgattttaatagattcctgaatatgcacatgctttaaaatttcttttttgggacattaaacatatg |
314 |
Q |
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| T |
13148020 |
aaagttgttgccaaaaatccatgtggattcaaagtgattttaatagattcctgaatatgcacatgcattaaaatttcttttttgggacattaaacatatg |
13147921 |
T |
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| Q |
315 |
attatgtgtcctttgtatcaagttgcagtggctacaaagagtgaatgacacaattttaaaaggttggtnnnnnnnttgcataaaatgtaactctacttgt |
414 |
Q |
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| T |
13147920 |
attatgtgtcctttgtatcaagttgcagtggctacaaagagtgaatgacacaattttaaaaggttggtgaaaaaattgcataaaatgtaactctacttgt |
13147821 |
T |
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| Q |
415 |
tcctctatggtttttcaataattgcaagatcaggtagtccctttgaaatatcatgtagaatgttagttgcatgtttggattcac---------aatccaa |
505 |
Q |
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| T |
13147820 |
tcctctatggtttttcaataattgcaagatgaggtagtccctttgaaatatcatttagaatgttagttgcatgtttggattcacttttaggaaaatccaa |
13147721 |
T |
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| Q |
506 |
aactgattctaaagatttagcttatgtttgataatccagtgggtcaccgctgccgcacgtttaaggttc |
574 |
Q |
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| T |
13147720 |
aactgattctaaagatttagcttatgtttgataatccaatgggtcaccgctgccgcacgtttaatgttc |
13147652 |
T |
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