View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16772_low_20 (Length: 250)
Name: NF16772_low_20
Description: NF16772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16772_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 6948023 - 6947792
Alignment:
| Q |
1 |
agattagtaagattttcaacattgtgaatgcttaccgtcccgaggaagatgaggaagttcgtcgtgaaaatcaatgcacttttgaaaactgattagagtc |
100 |
Q |
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| T |
6948023 |
agattagtaagattttcaacattgtgaatgcttaccgtcccaaggaagatgaggaagttcgttgtgaaaatcaatgcacttttgaaaactgattagagtc |
6947924 |
T |
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| Q |
101 |
tagggtttagtctctaaaactttatatggttaagatagttaagaggccactgcttttgttgattattatattttaacatgggattttttgttacacttcg |
200 |
Q |
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| T |
6947923 |
tagggtttagtctctaaaactttatatggtt---------aagaggccactgc-tttgttgattattatattttaacatgggatattatgttacgcttcg |
6947834 |
T |
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| Q |
201 |
ttttcatcatgaaaagaactgcattgtagatttacctatgctt |
243 |
Q |
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| T |
6947833 |
ttttcatcatg-aaagaactgcattgtagatttacctatgctt |
6947792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 6950367 - 6950263
Alignment:
| Q |
138 |
gttaagaggccactgcttttgttgattattatattttaacatgggattttttgttacacttcgttttcatcatgaaaagaactgcattg-tagatttacc |
236 |
Q |
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| T |
6950367 |
gttaagagaccactgcttt-gttgtttattatattttaacatgggatattatgttacgcttcgttttcatcatg-aaagaactgcattgttagatttatc |
6950270 |
T |
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| Q |
237 |
tatgctt |
243 |
Q |
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| T |
6950269 |
tatgctt |
6950263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 11160880 - 11160986
Alignment:
| Q |
1 |
agattagtaagattttcaacattgtgaatgcttaccgtcccgaggaagatgaggaagttcgtcgtgaaaatcaatgcacttttgaaaactgattagagtc |
100 |
Q |
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| T |
11160880 |
agattcgtaagactttcaacattattaatgattacactccggaggaagaggaggaagtccgtagcgaaactcaatgggcttttgacgaatgattagagtc |
11160979 |
T |
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| Q |
101 |
tagggtt |
107 |
Q |
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||||||| |
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| T |
11160980 |
tagggtt |
11160986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 116
Target Start/End: Complemental strand, 6950411 - 6950380
Alignment:
| Q |
85 |
aaaactgattagagtctagggtttagtctcta |
116 |
Q |
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| T |
6950411 |
aaaactgattagagtctagggtttagtctcta |
6950380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 662045 - 661917
Alignment:
| Q |
7 |
gtaagattttcaacattgtgaatgcttaccgtcccgaggaagatgaggaagttcgtcgtgaaaatcaatgcacttttgaaaactgattagagtctagggt |
106 |
Q |
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||||||||||||||||| | |||||||||||||| ||| |||| || |||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
662045 |
gtaagattttcaacattataaatgcttaccgtccggagtaagaggatgaagtttgtcgtgaaaatcaatgcacttttgaaaactaattagagtctagggt |
661946 |
T |
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| Q |
107 |
ttagtctctaaaactttatatggttaaga |
135 |
Q |
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||||||||||||| ||||||||||||||| |
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| T |
661945 |
ttagtctctaaaattttatatggttaaga |
661917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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