View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16772_low_3 (Length: 525)
Name: NF16772_low_3
Description: NF16772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16772_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 22 - 508
Target Start/End: Complemental strand, 24044525 - 24044034
Alignment:
| Q |
22 |
gtctgtaatacgaaataagagcagcgactagtttaaagtattaagttgccgctaaccagataatctgtcatcaagaatatataacattgttaaaaaagaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24044525 |
gtctgtaatacgaaataagagcagcgactagtttaaagtattaagttgccgctaaccagataatctgtcatcaagaatatataacattgttaaaaaagaa |
24044426 |
T |
|
| Q |
122 |
aatcttgcataacaggacatattagatctctggtgacnnnnnnngtgcaaactattctaagatgtgtttgagatctagctatttagaatcatagaggttt |
221 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||| |
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| T |
24044425 |
aatcttgcataacaggacatattagatctctggtgacaaaaaaagtgcaaactattctaagatgcgttcgagatctagctatttagtatcatagaggttt |
24044326 |
T |
|
| Q |
222 |
gcatactcacaaagaacttcatgtgccgtcatcctcttcttaggatcccttataagcattcttcgaacaagatcctttgcactttcagatatgcttggcc |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
24044325 |
gcatactcacaaagaacttcatgtgccgtcatcctcttcttaggatcccttataagcattcttcgaacaagatccttcgcactttcagatatgcttggcc |
24044226 |
T |
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| Q |
322 |
acggatcagaaataaagtcaagctctcctttcaatacttgctcaaatattccttgttcagtttctgatggaaagaccaaacacatcagacatataataca |
421 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
24044225 |
acggatcagaaataaagtcaagctctcctttcaatacttgctcaaatattccttgttcagtttctgatggaaagaccaaacacatcagacacatactaca |
24044126 |
T |
|
| Q |
422 |
acacagacacaac--atactgcttaagata---aacaaaatcaagtggcatagcattctcaccatcccaaaatggtggaactccactgagta |
508 |
Q |
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|||||||||||| ||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24044125 |
tcacagacacaactaatattgctgaagataaacaacaaaatcaagtggcatagcattctcaccatcccaaaatggtggaactccactgagta |
24044034 |
T |
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