View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16772_low_4 (Length: 518)
Name: NF16772_low_4
Description: NF16772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16772_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 17 - 499
Target Start/End: Original strand, 33823278 - 33823760
Alignment:
| Q |
17 |
caaaggggggacagtgtcacagggtctctaacttaattatatatgctaacatcaatctataaagtgagattcgaccaattgtcctaattaagctcaattg |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33823278 |
caaaagggggacagtgtcacagggtctctaacttaattatatatgctaacatcaatctataaagtgagattcgaccaattgtcctaattaagctcaattg |
33823377 |
T |
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| Q |
117 |
taattaataagtccacactaattatggaaatagagcatttcatgtgaaggacacttataaaagtacatgtgaagagtcaatagttcaactgaaagaatct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33823378 |
taattaataagtccacactaattatggaaatagagcatttcatgtgaaggacacttataaaagtacatgtgaagaatcaatagttcaactgaaagaatct |
33823477 |
T |
|
| Q |
217 |
ttggtgtatgaattattattagtctagcattgttaatttgtatgcatattttgtttcctactttgcttacatctacccttttccaattggtgaaagaaca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33823478 |
ttggtgtatgaattattattagtctagcattgttaatttgtatgcatattttgtttccttctttgcttacatctacccttttccaattggtgaaagaaca |
33823577 |
T |
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| Q |
317 |
gaagaacataaagacatgcatgctacttgtacattaaataacatgactgaacctacatgtgacttcagagacaatggccattcactatatgttcacttat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33823578 |
gaagaacataaagacatgcatgctacttgtacattaaataacatgactgaacctacatgtgacttcagagacaatggccattcactatatgttcacttat |
33823677 |
T |
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| Q |
417 |
tttcctttcctcattttactcacaaatgccagaatcaatatttagtcacaatagtcaaagtcatctgcaaataatgtcgttta |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33823678 |
tttcctttcctcattttactcacaaatgccagaatcaatatttagtcacaatagtcaaagtcatctgcaaataatgtcgttta |
33823760 |
T |
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