View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16772_low_6 (Length: 444)
Name: NF16772_low_6
Description: NF16772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16772_low_6 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Original strand, 29534578 - 29534991
Alignment:
| Q |
17 |
cacagacaaaccacaatttaatgatactttaatacacacaatataatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagct |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29534578 |
cacagacaaaccacaatttaatcatactttagtacacacaatataatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagct |
29534677 |
T |
|
| Q |
117 |
tgaacttactaaagcacatatacaaacctaaagactgaagactgatttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgctgaactg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29534678 |
tgaacttactaaagcacatatacaaacctaaagactgaagactgatttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgctgaactg |
29534777 |
T |
|
| Q |
217 |
gggaag-nnnnnnnnnctacatcagcaagagcactccatgacagaacctgcactcttgcaacactactgcataactatgttttcactaatgttgttctct |
315 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
29534778 |
gggaagaaaaaaaaaactacatcagcaagaccactccatgacagaacctgcactcttgcaacactactgcataactatgttttcattaatgttgttctct |
29534877 |
T |
|
| Q |
316 |
ttgtcatgctcataggacctaataggaaagactttgtttgcatccatgcccgtagtgtctctgatcaatctcgattctgcgaacatcgaaacatccatac |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29534878 |
ttgtcatgctcataggacctaataggaaagactttgtttgcatccatgcccgtagtgtctctgatcaatctcgattctgcgaacatcgaaacatccatac |
29534977 |
T |
|
| Q |
416 |
atattgtggaacat |
429 |
Q |
| |
|
|||||||||||||| |
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|
| T |
29534978 |
atattgtggaacat |
29534991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Complemental strand, 54420208 - 54419794
Alignment:
| Q |
17 |
cacagacaaaccacaatttaatgatactttaatacacacaatataatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagct |
116 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54420208 |
cacaaacaaaccacaatttaatcatactttaatacacacagtttaatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagct |
54420109 |
T |
|
| Q |
117 |
tgaacttactaaagcacatatacaaacctaaagactgaagactga-tttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgctgaact |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54420108 |
tgaacttactaaagcacatatacaaacctaaagactgaagactgattttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgctgaacc |
54420009 |
T |
|
| Q |
216 |
ggggaag-nnnnnnnnnctacatcagcaagagcactccatgacagaacctgcactcttgcaacactactgcataactatgttttcactaatgttgttctc |
314 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54420008 |
ggggaagaaaaaaaaaactacatcagcaagaccactccatgacagaacctgcactcttgcaacactactgcataactatgttttcactaatgttgttctc |
54419909 |
T |
|
| Q |
315 |
tttgtcatgctcataggacctaataggaaagactttgtttgcatccatgcccgtagtgtctctgatcaatctcgattctgcgaacatcgaaacatccata |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||| ||||||| |
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|
| T |
54419908 |
cttgtcatgctcataggacctaataggaaagactttgtttgcatccatgcccgtagtgtctctgatcaatttcggttctgctaacatcgaaatatccata |
54419809 |
T |
|
| Q |
415 |
catattgtggaacat |
429 |
Q |
| |
|
||||||||||||||| |
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|
| T |
54419808 |
catattgtggaacat |
54419794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 1143443 - 1143368
Alignment:
| Q |
40 |
atactttaatacacacaatataatgcccttctcatattt----aattatttcctctcatgaaaacagtcaaatttt |
111 |
Q |
| |
|
||||||||||| ||||||| |||| |||||| ||||||| | ||||| ||||||||||||||| ||||||||| |
|
|
| T |
1143443 |
atactttaatatacacaatttaatacccttcccatatttattgatttattccctctcatgaaaacaatcaaatttt |
1143368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 17 - 429
Target Start/End: Complemental strand, 6981819 - 6981419
Alignment:
| Q |
17 |
cacagacaaaccacaatttaatgatactttaatacacacaatataatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagct |
116 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |
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|
| T |
6981819 |
cacaaacaaaccacaatttaatcatactttaatacacacaatttaatgcccttctcatatttaattatttcttctcatgaaaacagtcaaattttaattt |
6981720 |
T |
|
| Q |
117 |
tgaacttactaaagcacatatacaaacctaaagactgaagactga-tttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgctgaact |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
6981719 |
tgaacttactaaagcacatatacaaacctaaagactgaagactgattttaacaccagtaaaagtcatgtttagctggcctacaaacaccatcgctgaacc |
6981620 |
T |
|
| Q |
216 |
ggggaagnnnnnnnnnctacatcagcaagagcactccatgacagaacctgcactcttgcaacactactgcataactatgttttcactaatgttgttctct |
315 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
6981619 |
ggggaagaaaaaaaaa-tacatcagcaagaccactccatgacagaacctgcactcttgca------------aactatgttttcactaatgttgttctcc |
6981533 |
T |
|
| Q |
316 |
ttgtcatgctcataggacctaataggaaagactttgtttgcatccatgcccgtagtgtctctgatcaatctcgattctgcgaacatcgaaacatccatac |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
6981532 |
ttgtcatgctcataggacctaataggaaagactttgtttgcatccatgcccgtagtgtctctgatcaatctcggttctgctaacatcgaaacatccatac |
6981433 |
T |
|
| Q |
416 |
atattgtggaacat |
429 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6981432 |
atattgtggaacat |
6981419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 361
Target Start/End: Original strand, 22291032 - 22291121
Alignment:
| Q |
275 |
aacactactgcataactatgttttcactaatgttgttctctt---tgtcatgctcataggacctaataggaaagactttgtttgcatcca |
361 |
Q |
| |
|
||||||| |||| |||| || ||||||||||||||||||| | || ||||||| |||| |||||||| ||||| ||||||| |||||| |
|
|
| T |
22291032 |
aacactattgcaaaactttgatttcactaatgttgttctcctcactgccatgctcgtaggtcctaatagcaaagaatttgtttacatcca |
22291121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 2841114 - 2840776
Alignment:
| Q |
17 |
cacagacaaaccacaatttaatgatactttaatacacacaatataatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagct |
116 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2841114 |
cacaaacaaaccacaatttaatcatactttaatacacacaatttaatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaaact |
2841015 |
T |
|
| Q |
117 |
tgaacttactaaagcacatatacaaacctaaagactgaagactga-tttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgctgaact |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2841014 |
tgaacttactaaagcacatatacaaacctaaagactgaagactgattttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgctgaatc |
2840915 |
T |
|
| Q |
216 |
ggggaag--nnnnnnnnnctacatcagcaagagcactccatgacagaacctgcactcttgcaacactactgcataactatgttttcactaatgttgttct |
313 |
Q |
| |
|
| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
2840914 |
gtggaagaaaaaaaaaaactacatcagcaagaccactccatgacagaacctgcactcttgcaacactactgcataactgtgttttcactaatgtcgttct |
2840815 |
T |
|
| Q |
314 |
ctttgtcatgctcataggacctaataggaaagactttgt |
352 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2840814 |
ccttgttatgctcataggacctaataggaaagactttgt |
2840776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 2848497 - 2848353
Alignment:
| Q |
17 |
cacagacaaaccacaatttaatgatactttaatacacacaatataatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagct |
116 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2848497 |
cacaaacaaaccacaatttaatcatactttaatacacacaatttaatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagct |
2848398 |
T |
|
| Q |
117 |
tgaacttactaaagcacatatacaaacctaaagactgaagactga |
161 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2848397 |
tgaacttactaaagcacatatacaaacctaaagactgaagactga |
2848353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 403
Target Start/End: Complemental strand, 31984458 - 31984356
Alignment:
| Q |
303 |
aatgttgttctctttgtcat--gctcataggacctaataggaaagactttgtttgcatccatgcccgtagtgtctctgatcaatctcgattctgcgaaca |
400 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||| | || |||||| ||||||||| || ||||| |||| |
|
|
| T |
31984458 |
aatgttattctctttgtcatatgctcaaaggttctaatagcaaagactttgtttgcatccattcatgttgtgtctttgatcaatcccggttctggtaaca |
31984359 |
T |
|
| Q |
401 |
tcg |
403 |
Q |
| |
|
||| |
|
|
| T |
31984358 |
tcg |
31984356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 2848209 - 2848171
Alignment:
| Q |
150 |
actgaagactgattt-aacaccagtaaaagtcatgttta |
187 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2848209 |
actgaagactgattttaacaccagtaaaagtcatgttta |
2848171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 232 - 429
Target Start/End: Original strand, 51853322 - 51853519
Alignment:
| Q |
232 |
ctacatcagcaagagcactccatgacagaacctgcactcttgcaacactactgcataactatgttttcactaatgttgttctctttgtcatgctcatagg |
331 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51853322 |
ctacatcagcaagaccactccatgacagaacctgcactcttgcaacactactgcataactatgttttcactaatgttgttctccttgtcatgctcatagg |
51853421 |
T |
|
| Q |
332 |
acctaataggaaagactttgtttgcatccatgcccgtagtgtctctgatcaatctcgattctgcgaacatcgaaacatccatacatattgtggaacat |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51853422 |
acctaataggaaagactttgtttgcatccatgcccgtagtgtctctgatcaatctcggttctgctaacatcgaaacatccatacatattgtggaacat |
51853519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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