View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16772_low_7 (Length: 407)
Name: NF16772_low_7
Description: NF16772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16772_low_7 |
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| [»] scaffold0012 (2 HSPs) |
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Alignment Details
Target: scaffold0012 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 17 - 388
Target Start/End: Complemental strand, 159219 - 158851
Alignment:
| Q |
17 |
caaaggctggtgaagtgattgattgatagagaaatatgtcagactgatgatcttgagacggacctatccgcctcatactcgtctagatatatcttttgca |
116 |
Q |
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| T |
159219 |
caaaggctggtgaagtgattgattgatagagaaatatgtcagactgat---cgtgagacggacctatctgcctcatactcgtctagatatatcttttgca |
159123 |
T |
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| Q |
117 |
gtaagcttgatatgccgactaaatcactcgccaggatttcaacgcttaagttgtttacaaatttcaatgtatcgaaattggtcacaaggaaaatgattaa |
216 |
Q |
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| T |
159122 |
gtaagcttgatatgccgactaaatcactcgccaggatttgaacacttaagttgtttacaaatttcaatgtatcgaaattggtcacaaggaaaatgattaa |
159023 |
T |
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| Q |
217 |
tctattagaagcatggatacatgcatagagaagtaagtgctcgagtagaatttgtttaatctataggagatgaacttatggttcgtgtaaattcattgac |
316 |
Q |
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| T |
159022 |
tctattagaagcatggatacatgcatagagaagtaagtgctcgagtagaatttgtttaatctataggagatgaacttatggttcttgtaaattcattgac |
158923 |
T |
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| Q |
317 |
gggaaccttgtgagaaacagaatatgctggccagaagcattactcgagtagaatttgaatgaaaggtgcgtg |
388 |
Q |
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| T |
158922 |
aggaaccttgtgagaaacagaatatgctggccagaagcattactcgagtagaatttgaatgaaaggtgcgtg |
158851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 303 - 382
Target Start/End: Complemental strand, 161087 - 161008
Alignment:
| Q |
303 |
gtaaattcattgacgggaaccttgtgagaaacagaatatgctggccagaagcattactcgagtagaatttgaatgaaagg |
382 |
Q |
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| T |
161087 |
gtaaattcattgacgggaaccttatgagaaacagaatgtggcggctaggagcagtgctcgagtagaatttgaatgaaagg |
161008 |
T |
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