View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16772_low_8 (Length: 389)
Name: NF16772_low_8
Description: NF16772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16772_low_8 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 383
Target Start/End: Complemental strand, 21909487 - 21909109
Alignment:
| Q |
10 |
tgagatgaagtccatggaaaaacataccctgtgataaagaagtatcttgccgaacatgatgtataatttttgccagaagactataagccaagggactcaa |
109 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21909487 |
tgagatgaagtccatggaaaaacataccctatgataaagaagtatcttgccgaacatgatgtataatttctgccagaagactataagccaagggactcaa |
21909388 |
T |
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| Q |
110 |
cgtctcaaagca----cacccagtctcaagcagatccctgaaagttttaaaatctatgaattagaatatgctcaatagtatgctgtcagggcttaacttc |
205 |
Q |
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|||||||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21909387 |
cgtctcaaagcatgcacacccagttgcaagcagatccctgaaatttttaaaatttatgaattagaatatgctcaatagtatgctgtcagggattaacttc |
21909288 |
T |
|
| Q |
206 |
ctcttattgttctacaattctctataaattataataagctcaatacatttgtatggtgtcatggtggaaggccaaatttttgccatattcctgacagacg |
305 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21909287 |
ctcttattgttctacaattctctataaatgataataagctcaatacatttgtatgttgtcatggtggaaggccaaatttttgccatattcctgacaggcg |
21909188 |
T |
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| Q |
306 |
tgcatttaaatcacaactatgaaatttctcaaacatatctactattgttagaaaaaataaaggaagc-ataatctaaca |
383 |
Q |
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| T |
21909187 |
agcatttaaatcacaactatgaaatttctcaaacatatctactattgttagaaaaaataaaggaagcaataatctaaca |
21909109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 56 - 383
Target Start/End: Original strand, 7201984 - 7202309
Alignment:
| Q |
56 |
ttgccgaacatgatgtataatttttgccagaagactataagccaagggactcaacgtctcaaagca----cacccagtctcaagcagatccctgaaagtt |
151 |
Q |
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| T |
7201984 |
ttgccaaacatgatgtgcaatttctgccaaaagactataacccaagggcctcaacatctcaaagcatgctcgcccaatcccaagtagatccctgacagtt |
7202083 |
T |
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| Q |
152 |
ttaaaatctatgaattagaatatgct------caatagtatgctgtcagggcttaacttcctcttattgttctacaattctctataaattataataagct |
245 |
Q |
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| T |
7202084 |
tgaaaatctatgaattagaatatgattagatacatttgtatgctgtcaga-cttaatttcctcttattgttctaaaattctttataaattagaataagc- |
7202181 |
T |
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| Q |
246 |
caatacatttgtatggtgtcatggtggaaggccaaatttttgccatattcctgacagacgtgcatttaaatcacaactatgaaatttctcaaacatatct |
345 |
Q |
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| T |
7202182 |
----------gtatgttgtcatggtgtaaggccaaattttagccatgctcctgacatgcgtgcatttaaatcacaactctgaaatttctaaaacatatct |
7202271 |
T |
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| Q |
346 |
actattgttagaaaaaataaaggaagcataatctaaca |
383 |
Q |
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| T |
7202272 |
aatattgtaagcaaaaacaaaggaagcttaatctaaca |
7202309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 37 - 225
Target Start/End: Complemental strand, 8594265 - 8594069
Alignment:
| Q |
37 |
cctgtgataaagaagtatcttgccgaacatgatgtataatttttgccagaagactataagccaagggactcaacgtctcaaagca----cacccagtctc |
132 |
Q |
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||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| |||||||||||| | ||||||| | |
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| T |
8594265 |
cctgtgataaagacagatcttgccgaacatgatgtacaatttctgccagaagactataagccaagggcctcagcgtctcaaagcatgctcgcccagtccc |
8594166 |
T |
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| Q |
133 |
aagcagatccctgaaagttttaaaatctatgaattagaatatgctcaata-----gtatgctgtcagggcttaacttcctcttattgttctacaattc |
225 |
Q |
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| T |
8594165 |
aaccagattcctgaaagtttgaaaatctataaattagaatatgctcaatacagttgtatgctgtca-ggcttaacttcctcttattgttctactattc |
8594069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 383
Target Start/End: Complemental strand, 8593834 - 8593757
Alignment:
| Q |
306 |
tgcatttaaatcacaactatgaaatttctcaaacatatctactattgttagaaaaaataaaggaagcataatctaaca |
383 |
Q |
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||||||||||||| |||| || ||||||||||||||||||| |||||| || ||||| ||||||| |||||||||||| |
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| T |
8593834 |
tgcatttaaatcataactctgcaatttctcaaacatatctaatattgtaagcaaaaacaaaggaaacataatctaaca |
8593757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 14 - 383
Target Start/End: Original strand, 57075 - 57452
Alignment:
| Q |
14 |
atgaagtccatggaaaaacataccctgtgataaagaagtatcttgccgaacatgatgtataatttttgccagaagactataagccaagggactcaacgtc |
113 |
Q |
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|||||||||| |||||||| ||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
57075 |
atgaagtccacggaaaaacgtaca-tgtgataaagatgtatcttgccgaacatgatgtataatttctgccagaagactataagccaagggactcaacgtc |
57173 |
T |
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| Q |
114 |
tcaaagca----cacccagtctcaagcagatccctgaaagttttaaaatctatgaattagaatatgctcaata-----gtatgctgtcagggcttaactt |
204 |
Q |
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|||||||| | ||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
57174 |
tcaaagcatgctcgcccagtcccaagcaaatccctgaaaggtttaaaatctatgaattagaatatgctcaatacatttgtatgctgtcagggattaactt |
57273 |
T |
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| Q |
205 |
cctcttattgttctacaattctctataaattataataagctcaatacatttgtatggtgtcatggtggaaggccaaatttttgccatattcctgacagac |
304 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||||||||||||||||||| |||||||| |||||||||||| | |
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| T |
57274 |
cctcttattgttctacaattctctataaattagaataagctcaatacatttttgtgctgtcatggtggaaggccaattttttgccgtattcctgacaggc |
57373 |
T |
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| Q |
305 |
gtgcatttaaatcacaactatgaaatttctcaaacatatctactattgttagaaaaaataaaggaagcataatctaaca |
383 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
57374 |
gtgcatttaaatcacagctatgaaatttctcaaacatatctactattgtaagcaaaaataaaggaagcataatctaaca |
57452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 53 - 383
Target Start/End: Complemental strand, 8882770 - 8882443
Alignment:
| Q |
53 |
atcttgccgaacatgatgtataatttttgccagaagactataagccaagggactcaacgtctcaaagca----cacccagtctcaagcagatccctgaaa |
148 |
Q |
| |
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|||||||| |||||||||| ||||| ||||| |||||||||| ||||||| |||||| |||||||||| | |||| || |||| |||||| ||||| |
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| T |
8882770 |
atcttgccaaacatgatgtgcaatttctgccaaaagactataacccaagggcctcaacatctcaaagcatgctcgcccaatcccaagtagatccttgaaa |
8882671 |
T |
|
| Q |
149 |
gttttaaaatctatgaattagaatatgctcaata-----gtatgctgtcagggcttaacttcctcttattgttctacaattctctataaattataataag |
243 |
Q |
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|||| |||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||| |||||| |
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| T |
8882670 |
gtttgaaaatctatgaattagaatatgctagatacatttgtatgctgtcagg-cttaatttcctcttattgttctaaaattctttataaattagaataag |
8882572 |
T |
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| Q |
244 |
ctcaatacatttgtatggtgtcatggtggaaggccaaatttttgccatattcctgacagacgtgcatttaaatcacaactatgaaatttctcaaacatat |
343 |
Q |
| |
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| ||||| |||||||||| ||||||||||||| ||||| |||||||| | |||||||||||||||||| |||||||||| |||||||| |
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| T |
8882571 |
c-----------gtatgttgtcatggtgtaaggccaaattttagccatgctcctgacatgcatgcatttaaatcacaactctgaaatttctaaaacatat |
8882483 |
T |
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| Q |
344 |
ctactattgttagaaaaaataaaggaagcataatctaaca |
383 |
Q |
| |
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||| |||||| || ||||| ||||||||| |||||||||| |
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| T |
8882482 |
ctaatattgtaagcaaaaacaaaggaagcttaatctaaca |
8882443 |
T |
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