View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16772_low_9 (Length: 381)
Name: NF16772_low_9
Description: NF16772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16772_low_9 |
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| [»] scaffold0001 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 26 - 227
Target Start/End: Complemental strand, 21909034 - 21908833
Alignment:
| Q |
26 |
aaccaagaaagtttcatgcaaaaactattctaatccagttcaagcttcaatacactaatagcaacaagccttagaaatttggcagcatgccatagttatc |
125 |
Q |
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|||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
21909034 |
aaccaagaaagtttcaagcagaaactattctaatctagttcaagcttcaatacactaatagcaacaaaccttagaaatttggaagcatgccatagttatc |
21908935 |
T |
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| Q |
126 |
tatgaactatagcatgctgaaccttagaaaattagcattctagaaacatgaaattacataaatgatatcaatctataaaaagcaatatagaatttttatt |
225 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21908934 |
tatgaactatagcatgctgaaccttagaaaatcagcattctagaaacatgaaattacataaatgatatcaatctataaaaagcaatattgaatttttatt |
21908835 |
T |
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| Q |
226 |
ct |
227 |
Q |
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|| |
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| T |
21908834 |
ct |
21908833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 252 - 363
Target Start/End: Complemental strand, 21908743 - 21908632
Alignment:
| Q |
252 |
attttattactatctaaacagaaccaatcacaggatttggatccactttggtccatataagagcactacctttggaggaagaatacccatcttctggaag |
351 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21908743 |
attttattactatctaaacagaactaatcacaggatttggaaccactttggtccatataagagcactacctttggaggaagaatacccaacttctggaag |
21908644 |
T |
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| Q |
352 |
cactccttgtgg |
363 |
Q |
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|||||||||||| |
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| T |
21908643 |
cactccttgtgg |
21908632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 96 - 230
Target Start/End: Original strand, 57629 - 57766
Alignment:
| Q |
96 |
ttagaaatttggcagcatgccatagttatctatgaactatagcatgctgaaccttagaaaattagcattctagaaacatgaaattacataaatgatatca |
195 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| || ||||||||||||||||| |
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| T |
57629 |
ttagaaatttagaagcatgccatagttatctatgaactatagcatgttgaaccttagaaaatcagcattctagaaacataaagttacataaatgatatca |
57728 |
T |
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| Q |
196 |
atctata---aaaagcaatatagaatttttattcttaa |
230 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
57729 |
atctataaacaaaagcaatatagaatttttattcttaa |
57766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 59297 - 59358
Alignment:
| Q |
300 |
tggtccatataagagcactacctttggaggaagaatacccatcttctggaagcactccttgt |
361 |
Q |
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| T |
59297 |
tggtccatgtaagagcactacctttggaggaagaatacccaacttctggaagcactccttgt |
59358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 57527 - 57598
Alignment:
| Q |
26 |
aaccaagaaagtttcatgcaaaaactattctaatccagttcaagcttcaatacactaatagcaacaagcctt |
97 |
Q |
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|||||||||||||||| ||| ||||||||||||||||| | |||||||||||||||||||| ||||| |||| |
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| T |
57527 |
aaccaagaaagtttcaagcagaaactattctaatccagattaagcttcaatacactaatagtaacaaacctt |
57598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38262394 - 38262362
Alignment:
| Q |
1 |
tctgatttctcatttgaatagctataaccaaga |
33 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
38262394 |
tctgatttctcatttgaatagctaaaaccaaga |
38262362 |
T |
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