View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16773_high_1 (Length: 533)
Name: NF16773_high_1
Description: NF16773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16773_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 9 - 518
Target Start/End: Original strand, 6393465 - 6393974
Alignment:
| Q |
9 |
agcagagagtatcacccgttgctaccccttcacaaagggatatcacagtactatttgcttttgtagcggcgctacacatgtatggtaaagaaaatggagt |
108 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| || |||||||||||||||||| |
|
|
| T |
6393465 |
agcagggagtatatcccgttgctaccccttcacaaagggatatcacagtacaatttgctttcgtagcgatgctacacacgtttggtaaagaaaatggagt |
6393564 |
T |
|
| Q |
109 |
ggaagtccaaaatatagtcctcttacttatcataagaatccaaattgtatggccaaatagaagtcctcttactcatcagataaaaaattaaaatttatta |
208 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6393565 |
ggaagtcccaagtatagtcctcttacttatcataagaatccaaattgtatggccaaatagaagtcctcttactcatcagataaaaaattaaaatttatta |
6393664 |
T |
|
| Q |
209 |
gcagtttctctttagagagaacaaatatgaattagcaattaagaacatgctcataaaaaacaagcagtggttctaaaggtacacacaaaacagagatgca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6393665 |
gcagtttctctttagagagaacaaatatgaatcagcaattaagaacatgctcgtaaaaaacaagcagtggttctaaaggtacacacaaaacagagatgca |
6393764 |
T |
|
| Q |
309 |
aacaactaatgtaatttatctcaaactcaaaactaatgtgaaaacaaaaccgagcaacaagagaagtaatgtaattaatctcttgcaggttgcaagatgc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6393765 |
aacaactaatgtaatttatctcaaactcaaaactaatgtgaaaacaaaaccgagcaacaagagaagtaatgtaattaatctcttgcaggttgcaagatgc |
6393864 |
T |
|
| Q |
409 |
aatgaaacaaatactcaagccgaaacagcaagagctggtgaaattgagaatagaatatcctttcagcacaattttgagcaaatctttgtgaagaaaataa |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6393865 |
aatgaaacaaatactcaagccgaaacagcaagagctggtgaaattgagaatagaatatcctttcagcacaattttgagcaaatctgtgtgaagaaaataa |
6393964 |
T |
|
| Q |
509 |
ctatataaat |
518 |
Q |
| |
|
|||||||||| |
|
|
| T |
6393965 |
ctatataaat |
6393974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University