View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16773_high_10 (Length: 283)
Name: NF16773_high_10
Description: NF16773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16773_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 28331932 - 28331670
Alignment:
| Q |
1 |
ccaatggaaaggggaaaagcgatgaagatataaaccacctccctcaaaaacaaaatagccatgaaccaccaaacacttctactagtggttacctttgcaa |
100 |
Q |
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| T |
28331932 |
ccaatggaaagggcaaaagcgat-aagatataaactacctccctcaaaaacaaaatagccatgaaccaccaaacacttctactagtggttacctttgcaa |
28331834 |
T |
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| Q |
101 |
gtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccaccagggccaaacccatttcccataattggaaacat |
200 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28331833 |
gtgcaagcattctcatctttattattagaaaagttaaacaaacccaaaattccaccaagcttccaccagggccaaacccatttcccataattggaaacat |
28331734 |
T |
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| Q |
201 |
cttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggaccaatc |
264 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28331733 |
cttagaacttggcaaaaacccacacaaggcactcacaaaactctcaaaaacctatggaccaatc |
28331670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 60 - 264
Target Start/End: Complemental strand, 28321395 - 28321191
Alignment:
| Q |
60 |
catgaaccaccaaacacttctactagtggttacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaag |
159 |
Q |
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|||| |||| |||||||||||||||||| || |||||| |||||||| |||||||||||| |||||||||||| || |||||||||||||| ||||| |
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| T |
28321395 |
catggaccatcaaacacttctactagtgatttcctttgtaagtgcaaccattctcatcttcattcttagaaaatcaaaccaaacccaaaattctactaaa |
28321296 |
T |
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| Q |
160 |
cttccaccagggccaaacccatttcccataattggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggac |
259 |
Q |
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| T |
28321295 |
cttccaccagggccaaagccacttcccatcattggaaacatcttagaacttggcaaaaatccacacaaggcattaacaaaactctcaaaaatctatggac |
28321196 |
T |
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| Q |
260 |
caatc |
264 |
Q |
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||||| |
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| T |
28321195 |
caatc |
28321191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 68 - 264
Target Start/End: Complemental strand, 28297325 - 28297129
Alignment:
| Q |
68 |
accaaacacttctactagtggttacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccacc |
167 |
Q |
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|||||||||||||||||||| |||||| | || ||| |||||||||||| |||||||||||| | | |||||||||||||| ||||| |||||||| |
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| T |
28297325 |
accaaacacttctactagtgattacctctttgtgtacaaccattctcatcttcattcttagaaaattaatccaaacccaaaattctactaaacttccacc |
28297226 |
T |
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| Q |
168 |
agggccaaacccatttcccataattggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggaccaatc |
264 |
Q |
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| T |
28297225 |
agggccatacccacttcccatcataggaaacatcttagaacttggcaaaaacccacataaggcactcacaaaactctcacaaaactatggaccaatc |
28297129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 92 - 263
Target Start/End: Original strand, 28287912 - 28288083
Alignment:
| Q |
92 |
cctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccaccagggccaaacccatttcccataat |
191 |
Q |
| |
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|||||| |||||||||||| |||||| | |||||||||||| | || ||||| |||||||| || || ||||||||||||||||| ||| ||||||| || |
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| T |
28287912 |
cctttgtaagtgcaagcatcctcatcctcattcttagaaaattaaaccaaactcaaaattctacaaaacttccaccagggccaaagccacttcccatcat |
28288011 |
T |
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| Q |
192 |
tggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggaccaat |
263 |
Q |
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|||||||||||| ||||||||||||| ||||||| | |||| ||||| |||||||| | |||||||||||| |
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| T |
28288012 |
aggaaacatcttacaacttggcaaaaacccacacaggacactcacaaatctctcaaacatctatggaccaat |
28288083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 68 - 263
Target Start/End: Complemental strand, 28310813 - 28310618
Alignment:
| Q |
68 |
accaaacacttctactagtggttacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccacc |
167 |
Q |
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|||||||||||||||| ||| |||||| | |||| |||||||||||||| ||| ||| |||| | || ||||| |||||||| || || |||||||| |
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| T |
28310813 |
accaaacacttctactggtgattacctctttgtgtgcgagcattctcatcttcatttttaaaaaattaaaccaaactcaaaattctacaaaacttccacc |
28310714 |
T |
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| Q |
168 |
agggccaaacccatttcccataattggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggaccaat |
263 |
Q |
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||||||||| ||| ||||||| || |||||||||||| ||||||||||||||||||||| | |||| ||||| |||||||| | |||||||||||| |
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| T |
28310713 |
agggccaaaaccacttcccatcataggaaacatcttacaacttggcaaaaatccacacaggacactcacaaatctctcaaacatctatggaccaat |
28310618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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