View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16773_high_13 (Length: 209)

Name: NF16773_high_13
Description: NF16773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16773_high_13
NF16773_high_13
[»] chr6 (2 HSPs)
chr6 (87-192)||(12345627-12345733)
chr6 (17-90)||(8888265-8888338)
[»] chr5 (7 HSPs)
chr5 (87-178)||(4085333-4085425)
chr5 (17-90)||(35169140-35169214)
chr5 (17-90)||(7783168-7783241)
chr5 (39-90)||(7782671-7782722)
chr5 (39-90)||(29240871-29240922)
chr5 (39-90)||(26591947-26591998)
chr5 (39-90)||(33052690-33052741)
[»] chr8 (7 HSPs)
chr8 (101-176)||(3417824-3417901)
chr8 (40-90)||(24982823-24982873)
chr8 (17-90)||(24982642-24982715)
chr8 (26-90)||(4018282-4018346)
chr8 (39-90)||(5423796-5423847)
chr8 (39-90)||(24983072-24983123)
chr8 (39-90)||(39028277-39028328)
[»] chr7 (9 HSPs)
chr7 (39-90)||(34951676-34951727)
chr7 (17-90)||(39778533-39778606)
chr7 (26-90)||(39012645-39012709)
chr7 (39-90)||(576696-576747)
chr7 (39-90)||(6496299-6496350)
chr7 (39-90)||(32984620-32984671)
chr7 (39-90)||(47396195-47396246)
chr7 (17-87)||(19924968-19925038)
chr7 (39-87)||(17076577-17076625)
[»] chr4 (11 HSPs)
chr4 (39-90)||(707618-707669)
chr4 (39-90)||(707373-707424)
chr4 (39-90)||(729191-729242)
chr4 (16-71)||(3334175-3334230)
chr4 (39-90)||(3735590-3735641)
chr4 (39-90)||(23095101-23095152)
chr4 (39-90)||(43318753-43318804)
chr4 (39-90)||(47526203-47526254)
chr4 (17-90)||(44519330-44519403)
chr4 (39-90)||(728947-728999)
chr4 (39-90)||(6202256-6202308)
[»] chr1 (9 HSPs)
chr1 (39-90)||(23730034-23730085)
chr1 (39-90)||(52348127-52348178)
chr1 (39-90)||(5943328-5943379)
chr1 (39-90)||(5943504-5943555)
chr1 (39-90)||(21443428-21443479)
chr1 (40-91)||(52348359-52348410)
chr1 (40-90)||(37691905-37691955)
chr1 (45-90)||(34609938-34609983)
chr1 (42-90)||(13522831-13522879)
[»] chr3 (5 HSPs)
chr3 (26-90)||(25704009-25704073)
chr3 (39-90)||(36632467-36632518)
chr3 (39-90)||(45878591-45878642)
chr3 (16-71)||(19245744-19245800)
chr3 (38-90)||(40319728-40319780)
[»] chr2 (3 HSPs)
chr2 (39-90)||(23865864-23865915)
chr2 (40-90)||(4232618-4232668)
chr2 (17-90)||(44719919-44719992)
[»] scaffold0006 (1 HSPs)
scaffold0006 (42-90)||(120842-120890)


Alignment Details
Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 87 - 192
Target Start/End: Complemental strand, 12345733 - 12345627
Alignment:
Q  87 aaaaccatccctcttttttgtgaatagaatgaaaaccatttaaagttaattgaattgatagtctattctatgtgaacaac-aatccagaattgttgtgat 185  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  12345733 aaaaccacccctcttttttgtgaatagaatgaaaaccctttaaagttaattgaattgatagtttattctatgtgaacaacaaatccagaattgttgtgat 12345634  T
Q  186 ctgtaat 192  Q
    |||||||    
T  12345633 ctgtaat 12345627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 8888265 - 8888338
Alignment:
Q  17 aaatattagttttaaaaccagtaaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    ||||||| |||||||||  |  |||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  8888265 aaatattggttttaaaaaaataaaaaataataaaaatattgcgaataaacgtgaaagtgacacgtgacataaaa 8888338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 9e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 87 - 178
Target Start/End: Original strand, 4085333 - 4085425
Alignment:
Q  87 aaaaccatccctcttttttgtgaatagaatgaaaaccatttaaagttaattgaattgatagtctattctatgtgaacaac-aatccagaattg 178  Q
    ||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||| |||| ||||||||||||||||| ||||||||||||    
T  4085333 aaaaccacccctcttttttgtgaatagaatgaaaaccctttaaaattaattgaattggtagtttattctatgtgaacaacaaatccagaattg 4085425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 35169214 - 35169140
Alignment:
Q  17 aaatattagttttaaaacc-agtaaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||||   | |||||||||||||||||||||||||||| ||| | ||||| ||||||||||||    
T  35169214 aaatattagttttaaaaaataataaaaataataaaaatactgtgaataaacgtgaaagtgactcgtgacataaaa 35169140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 7783241 - 7783168
Alignment:
Q  17 aaatattagttttaaaaccagtaaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||||     |||||||||||||||| || ||||||||||||| |||||||||| |||||||    
T  7783241 aaatattagttttaaaaaatagaaaaataataaaaatattgcgaataaatgtggaagtgacacgtgtcataaaa 7783168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 7782722 - 7782671
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||||||||| |||||||||| |||||||    
T  7782722 aaaaataataaaaatattgcgaataaatgtggaagtgacacgtggcataaaa 7782671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 29240922 - 29240871
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||| ||||| ||||||||||||||||||    
T  29240922 aaaaataataaaaatattgcgaataaacgtggaagtgacacgtgacataaaa 29240871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 26591998 - 26591947
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  26591998 aaaaataataaaaatattgcgaataaacgtgaaagtgacacgtgacataaaa 26591947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 33052741 - 33052690
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| |||||||||| ||| | |||||| |||||||||||    
T  33052741 aaaaataataaaaatattgtgaataaacgtgaaagtgacatgtgacataaaa 33052690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 3417824 - 3417901
Alignment:
Q  101 tttttgtgaatagaatgaaaaccatttaaa-gttaattgaattgatagtctattctatgtgaacaac-aatccagaat 176  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  3417824 tttttgtgaatagaatgaaaaccctttaaaagttaattgaattggtagtttattctatgtgaacaacaaatccagaat 3417901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 24982873 - 24982823
Alignment:
Q  40 aaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  24982873 aaaataataaaaatattgtgaataaacgtggaagtgacacgtgacataaaa 24982823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 24982715 - 24982642
Alignment:
Q  17 aaatattagttttaaaaccagtaaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||||     |||||||||||||||| || ||||| | ||||| ||||||||||||||||||    
T  24982715 aaatattagttttaaaaaatagaaaaataataaaaatattgcgaatatacgtggaagtgacacgtgacataaaa 24982642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 4018282 - 4018346
Alignment:
Q  26 ttttaaaaccagtaaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    ||||||||  || |||||||||||||||| || |||| |||||||| |||||||||| |||||||    
T  4018282 ttttaaaaatagaaaaaataataaaaatattgagaatgaatgtggaagtgacacgtggcataaaa 4018346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 5423847 - 5423796
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    ||||||||||| |||| || ||||||| ||||| ||||||||||||||||||    
T  5423847 aaaaataataataatattgagaataaacgtggaagtgacacgtgacataaaa 5423796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 24983123 - 24983072
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||| | ||||| ||||||||||||||||||    
T  24983123 aaaaataataaaaatattgcgaatatacgtggaagtgacacgtgacataaaa 24983072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 39028328 - 39028277
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||||||| | |||||||||| |||||||    
T  39028328 aaaaataataaaaataatgcgaataaatgtgaaagtgacacgtggcataaaa 39028277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 34951676 - 34951727
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||| ||||| ||||||||||||||||||    
T  34951676 aaaaataataaaaatattgagaataaacgtggaagtgacacgtgacataaaa 34951727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 39778606 - 39778533
Alignment:
Q  17 aaatattagttttaaaaccagtaaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    ||||||| |||||||||    ||||||||||||||||| || ||||||| ||||| |||||| |||||||||||    
T  39778606 aaatattggttttaaaaaatataaaaataataaaaatattgcgaataaacgtggaagtgacaagtgacataaaa 39778533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 39012645 - 39012709
Alignment:
Q  26 ttttaaaaccagtaaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    ||||||||  || |||||||||||||||| || |||| ||||| || ||||||||||||||||||    
T  39012645 ttttaaaaatagaaaaaataataaaaatattgagaatgaatgttgaagtgacacgtgacataaaa 39012709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 576696 - 576747
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  576696 aaaaataataaaaataatgggaataaacgtgaaagtgacacgtgacataaaa 576747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 6496350 - 6496299
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  6496350 aaaaataataaaaatattgcgaataaacgtgaaagtgacacgtgacataaaa 6496299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 32984671 - 32984620
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| |  ||||||| ||||| ||||||||||||||||||    
T  32984671 aaaaataataaaaatattacgaataaacgtggaagtgacacgtgacataaaa 32984620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 47396246 - 47396195
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  47396246 aaaaataataaaaatattgcgaataaacgtgaaagtgacacgtgacataaaa 47396195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 19925038 - 19924968
Alignment:
Q  17 aaatattagttttaaaaccagtaaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacata 87  Q
    |||||||||||||||||     |||||||||||||||| || ||||||| ||||| ||||||| |||||||    
T  19925038 aaatattagttttaaaaaatagaaaaataataaaaatattgagaataaacgtggaagtgacacatgacata 19924968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 17076577 - 17076625
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacata 87  Q
    |||||||||||||||  || |||| |||||||| |||||||||||||||    
T  17076577 aaaaataataaaaatgttgagaatgaatgtggaagtgacacgtgacata 17076625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 707669 - 707618
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||| ||||| ||||||||||||||||||    
T  707669 aaaaataataaaaatattgcgaataaacgtggaagtgacacgtgacataaaa 707618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 707424 - 707373
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||| ||||| || |||||||||||||||    
T  707424 aaaaataataaaaatattgcgaataaacgtggaagttacacgtgacataaaa 707373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 729191 - 729242
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||| ||||| || |||||||||||||||    
T  729191 aaaaataataaaaatattgcgaataaacgtggaagttacacgtgacataaaa 729242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 3334230 - 3334175
Alignment:
Q  16 aaaatattagttttaaaaccagtaaaaataataaaaatactgtgaataaatgtgga 71  Q
    |||||||| |||||||||  || |||||||||||||||| || |||||||||||||    
T  3334230 aaaatattggttttaaaaatagaaaaaataataaaaatattgagaataaatgtgga 3334175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 3735641 - 3735590
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||| ||||| |||||||||| |||||||    
T  3735641 aaaaataataaaaatattgcgaataaacgtggaagtgacacgtggcataaaa 3735590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 23095152 - 23095101
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || |||| ||| |||| ||||||||||||||||||    
T  23095152 aaaaataataaaaatattgagaatgaatatggaagtgacacgtgacataaaa 23095101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 43318753 - 43318804
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || |||||||| || | ||||||||||||||||||    
T  43318753 aaaaataataaaaatattgcgaataaatatgaaagtgacacgtgacataaaa 43318804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 47526254 - 47526203
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||| ||||| |||||||||| |||||||    
T  47526254 aaaaataataaaaatattgcgaataaacgtggaagtgacacgtggcataaaa 47526203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 44519403 - 44519330
Alignment:
Q  17 aaatattagttttaaaaccagtaaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||||     |||||||||||||||| || ||||||| ||| | |||||||||| |||||||    
T  44519403 aaatattagttttaaaaaatagaaaaataataaaaatattgcgaataaacgtgaaagtgacacgtggcataaaa 44519330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 728947 - 728999
Alignment:
Q  39 aaaaataataaaaatact-gtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| | | ||||||| ||||| ||||||||||||||||||    
T  728947 aaaaataataaaaatattcgcgaataaacgtggaagtgacacgtgacataaaa 728999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 6202256 - 6202308
Alignment:
Q  39 aaaaataataaaaa-tactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||| || || ||||||| ||||| ||||||||||||||||||    
T  6202256 aaaaataataaaaaatattgcgaataaacgtggaagtgacacgtgacataaaa 6202308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 23730085 - 23730034
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| |||||||||| ||| | ||||||||||||||||||    
T  23730085 aaaaataataaaaatattgtgaataaacgtgaaagtgacacgtgacataaaa 23730034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 52348178 - 52348127
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||| ||||| ||||||||||||||||||    
T  52348178 aaaaataataaaaatattgcgaataaacgtggaagtgacacgtgacataaaa 52348127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 5943328 - 5943379
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| |||||||| | ||||| |||||||||| |||||||    
T  5943328 aaaaataataaaaatattgtgaatatacgtggaagtgacacgtggcataaaa 5943379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 5943504 - 5943555
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  5943504 aaaaataataaaaatattgcgaataaacgtgaaagtgacacgtgacataaaa 5943555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 21443428 - 21443479
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  21443428 aaaaataataaaaatattgcgaataaacgtgaaagtgacacgtgacataaaa 21443479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 52348410 - 52348359
Alignment:
Q  40 aaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaac 91  Q
    ||||||||||||||| |  ||||||| ||||| |||||||||||||||||||    
T  52348410 aaaataataaaaatattacgaataaacgtggaagtgacacgtgacataaaac 52348359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 37691905 - 37691955
Alignment:
Q  40 aaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    ||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  37691905 aaaataataaaaatattgcgaataaacgtgaaagtgacacgtgacataaaa 37691955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 34609938 - 34609983
Alignment:
Q  45 aataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||| || ||||||| ||||| ||||||||||||||||||    
T  34609938 aataaaaatattgagaataaacgtggaagtgacacgtgacataaaa 34609983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 13522831 - 13522879
Alignment:
Q  42 aataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    ||||||||||||| || ||||||||||||| |||| ||||| |||||||    
T  13522831 aataataaaaatattgcgaataaatgtggaagtgatacgtggcataaaa 13522879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 25704009 - 25704073
Alignment:
Q  26 ttttaaaaccagtaaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    ||||||||  || ||||||||||||| || || |||| |||||||| ||||||||||||||||||    
T  25704009 ttttaaaaatagaaaaaataataaaagtattgagaatgaatgtggaagtgacacgtgacataaaa 25704073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 36632518 - 36632467
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||| ||||| ||||||||||||| ||||    
T  36632518 aaaaataataaaaatattgcgaataaacgtggaagtgacacgtgacacaaaa 36632467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 45878591 - 45878642
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||| ||| | ||||||||||||||||||    
T  45878591 aaaaataataaaaatattgcgaataaacgtgaaagtgacacgtgacataaaa 45878642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 19245744 - 19245800
Alignment:
Q  16 aaaatattagttttaaaacc-agtaaaaataataaaaatactgtgaataaatgtgga 71  Q
    |||||||||||||||||||  |  |||||||||||||||| || |||||||||||||    
T  19245744 aaaatattagttttaaaacataaaaaaaataataaaaatattgagaataaatgtgga 19245800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 40319780 - 40319728
Alignment:
Q  38 taaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    ||||||||||||||||| || ||||| ||||||| |||||| ||| |||||||    
T  40319780 taaaaataataaaaatattgcgaatatatgtggaagtgacatgtggcataaaa 40319728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 23865864 - 23865915
Alignment:
Q  39 aaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||| || ||||||| ||||| |||||||||| |||||||    
T  23865864 aaaaataataaaaatattgcgaataaacgtggaagtgacacgtggcataaaa 23865915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 4232668 - 4232618
Alignment:
Q  40 aaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    ||||||||||||||| || ||||||| ||||| |||||||||| |||||||    
T  4232668 aaaataataaaaatattgcgaataaacgtggaagtgacacgtggcataaaa 4232618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 44719919 - 44719992
Alignment:
Q  17 aaatattagttttaaaaccagtaaaaataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    |||||||||||||||||     |||||||||||||||| || ||||| | ||||| |||||||||| |||||||    
T  44719919 aaatattagttttaaaaaataaaaaaataataaaaatattgcgaatatacgtggaagtgacacgtggcataaaa 44719992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 120842 - 120890
Alignment:
Q  42 aataataaaaatactgtgaataaatgtggaggtgacacgtgacataaaa 90  Q
    ||||||||||||| || ||||||| ||||| |||||||||| |||||||    
T  120842 aataataaaaatattgcgaataaacgtggaagtgacacgtggcataaaa 120890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University