View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16773_high_3 (Length: 468)

Name: NF16773_high_3
Description: NF16773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16773_high_3
NF16773_high_3
[»] chr5 (8 HSPs)
chr5 (23-454)||(12164550-12164961)
chr5 (2-104)||(14913923-14914026)
chr5 (38-109)||(36447590-36447661)
chr5 (27-109)||(7719657-7719739)
chr5 (409-454)||(11898005-11898050)
chr5 (369-404)||(27502890-27502925)
chr5 (80-109)||(15405343-15405372)
chr5 (58-107)||(37999480-37999529)
[»] chr7 (8 HSPs)
chr7 (118-294)||(34613110-34613286)
chr7 (23-110)||(37526386-37526473)
chr7 (28-111)||(46768007-46768090)
chr7 (27-109)||(45358051-45358133)
chr7 (44-111)||(40167215-40167282)
chr7 (35-109)||(45235105-45235179)
chr7 (28-104)||(20078729-20078805)
chr7 (68-111)||(37526524-37526567)
[»] chr6 (5 HSPs)
chr6 (13-107)||(32429506-32429600)
chr6 (23-109)||(24324253-24324339)
chr6 (27-108)||(2158424-2158502)
chr6 (27-107)||(5330582-5330662)
chr6 (409-454)||(11084152-11084197)
[»] chr3 (6 HSPs)
chr3 (325-405)||(42664894-42664974)
chr3 (23-109)||(12907268-12907354)
chr3 (50-108)||(12906564-12906622)
chr3 (27-109)||(54776859-54776941)
chr3 (27-106)||(47804047-47804124)
chr3 (68-109)||(47804178-47804219)
[»] chr1 (8 HSPs)
chr1 (34-114)||(15536228-15536309)
chr1 (34-114)||(22545122-22545203)
chr1 (23-109)||(40032243-40032329)
chr1 (23-98)||(527987-528063)
chr1 (33-85)||(23930398-23930450)
chr1 (35-107)||(18341668-18341740)
chr1 (27-108)||(47148367-47148448)
chr1 (27-110)||(40205093-40205177)
[»] chr4 (10 HSPs)
chr4 (35-98)||(5472699-5472762)
chr4 (27-109)||(13073033-13073114)
chr4 (28-67)||(35619376-35619415)
chr4 (46-108)||(38502063-38502126)
chr4 (27-81)||(23850024-23850078)
chr4 (406-454)||(25701217-25701265)
chr4 (68-103)||(5472566-5472601)
chr4 (69-111)||(35619474-35619517)
chr4 (368-405)||(51205106-51205143)
chr4 (406-454)||(7152266-7152314)
[»] chr8 (5 HSPs)
chr8 (27-105)||(30467145-30467223)
chr8 (34-114)||(23690158-23690239)
chr8 (28-97)||(37244928-37244997)
chr8 (35-109)||(7243793-7243867)
chr8 (71-109)||(32112834-32112872)
[»] scaffold0221 (2 HSPs)
scaffold0221 (33-105)||(6609-6679)
scaffold0221 (68-109)||(6740-6781)
[»] chr2 (4 HSPs)
chr2 (56-109)||(31938035-31938088)
chr2 (53-104)||(30827674-30827725)
chr2 (68-116)||(30762917-30762965)
chr2 (53-105)||(30762792-30762844)


Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 23 - 454
Target Start/End: Original strand, 12164550 - 12164961
Alignment:
Q  23 taatgaaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatccctttttcctttca 122  Q
    ||||||||| | ||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  12164550 taatgaaaaatagttgttgtattttaaagatggagattgaaaataaagaaaacttcagaaaattttcaatggagagaatccaaattcctttttcctttca 12164649  T
Q  123 agtatcagcatttcgaagttgcttttaatgatattcaatagagagtgaaattcctaaacatagcctttatatcccttgatatattctcagaaagtgtctg 222  Q
    | ||||| |||||                   |||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| ||    
T  12164650 aatatcaacattt-------------------attcaatagagagtgaaattcctaaacatagcctttatctcccttggtatgttctcagaaagtgtatg 12164730  T
Q  223 cactttcaagtacaacggatgcagcgcaaatactgagagtgaattgaaagaaaagcatatatgagattaggatgtttatatgtatcttacgaaaatctaa 322  Q
    |||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12164731 cactctcaagtacaacggatgcagcgcaaataccgagagtgaactgaaagaaaagcatatatgagattaggatgtttatatgtatcttacgaaaatctaa 12164830  T
Q  323 ctggaaaattcaactaaatcacctaatctccaaattcgattgttgttatcataatacttcaatcacattcatataattttaacatgttaactttagcaga 422  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  12164831 ctggaaaattcaactaaatcacctaatc-cccaattcgattgttgttatcataatacttcaatcacattcatatcattttaacatgttaactttagcaaa 12164929  T
Q  423 aaagttattatcatcacttcaccataaaattt 454  Q
    ||||| ||| |||| |||||||| ||||||||    
T  12164930 aaagtcattctcatgacttcaccgtaaaattt 12164961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 14913923 - 14914026
Alignment:
Q  2 tataattagggacggagggagtaatgaaaagtggtt-gttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaa 100  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||| | |||||||| |||||||||||||||||| ||||   ||||||||||| |    
T  14913923 tataattagggacggagggagtaataaaaagtggtttgttgtattttaacgatggagattaaaaatagagaaaacttgaaaaaaaaatcaatggagagga 14914022  T
Q  101 tcca 104  Q
    ||||    
T  14914023 tcca 14914026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 36447661 - 36447590
Alignment:
Q  38 gttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatcc 109  Q
    |||||||||||| |||| ||||||||||| ||||||| |  ||||||||||||||  |||| ||||||||||    
T  36447661 gttgtattttaatggtgaagattgaaaatggagaaaattgaagaaaattttcaataaagaggatccaaatcc 36447590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 7719739 - 7719657
Alignment:
Q  27 gaaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatcc 109  Q
    |||||||||||  ||  |||||| |||||| ||| ||||| |||||||||||| ||| ||||||||| |||| ||||||||||    
T  7719739 gaaaagtggttagtgatttttaatggtggatattaaaaatggagaaaacttgaaaaagttttcaatgaagaggatccaaatcc 7719657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 454
Target Start/End: Complemental strand, 11898050 - 11898005
Alignment:
Q  409 ttaactttagcagaaaagttattatcatcacttcaccataaaattt 454  Q
    ||||||||| |||||||||||||||||| |||||||| ||||||||    
T  11898050 ttaactttaccagaaaagttattatcatgacttcaccctaaaattt 11898005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 404
Target Start/End: Original strand, 27502890 - 27502925
Alignment:
Q  369 tatcataatacttcaatcacattcatataattttaa 404  Q
    |||||||||||||||||||||||||||| |||||||    
T  27502890 tatcataatacttcaatcacattcatatcattttaa 27502925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 109
Target Start/End: Complemental strand, 15405372 - 15405343
Alignment:
Q  80 gaaaattttcaatggagagaatccaaatcc 109  Q
    ||||||||||||||||||||||||||||||    
T  15405372 gaaaattttcaatggagagaatccaaatcc 15405343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 107
Target Start/End: Original strand, 37999480 - 37999529
Alignment:
Q  58 attgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaat 107  Q
    ||||||||| |||||||||||| | |||||| |||||||||||| |||||    
T  37999480 attgaaaatggagaaaacttgatagaattttaaatggagagaattcaaat 37999529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 118 - 294
Target Start/End: Complemental strand, 34613286 - 34613110
Alignment:
Q  118 tttcaagtatcagcatttcgaagttgcttttaatgatattcaatagagagtgaaattcctaaacatagcctttatatcccttgatatattctcagaaagt 217  Q
    |||||| ||||||||||| |||| |||| | |||| ||||||||||||||||||||||||||||||| ||||||| |||  || ||| ||||||||||||    
T  34613286 tttcaaatatcagcattttgaagatgctatgaatgctattcaatagagagtgaaattcctaaacataacctttatctcctctggtatgttctcagaaagt 34613187  T
Q  218 gtctgcactttcaagtacaacggatgcagcgcaaatactgagagtgaattgaaagaaaagcatatatgagattagga 294  Q
    | ||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  34613186 gcctgcactctcaggtacaacggatgcagcgcaaatactgagagtgaactgaaagaaaaccatatatgagattagga 34613110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 37526473 - 37526386
Alignment:
Q  23 taatgaaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatccc 110  Q
    |||| |||||||||||||||||||||| |||||||||||||||| |||||||||| | | |||||||||||||||  |||||||||||    
T  37526473 taataaaaagtggttgttgtattttaatggtggagattgaaaatggagaaaacttaaaagaattttcaatggagatgatccaaatccc 37526386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 46768007 - 46768090
Alignment:
Q  28 aaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatccct 111  Q
    ||||||| |||||| ||||||   ||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||    
T  46768007 aaaagtgcttgttgcattttatttgtggagattgaaaatggagaaaacttgagaaaattttcaatggagagaatttaaatccct 46768090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 45358051 - 45358133
Alignment:
Q  27 gaaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatcc 109  Q
    ||||| ||||||||||||||||| |||| || |||||||| ||||||| |||||| |||||| |||||||| |||| ||||||    
T  45358051 gaaaaatggttgttgtattttaagggtgaagtttgaaaatggagaaaatttgagagaatttttaatggagaaaatctaaatcc 45358133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 40167282 - 40167215
Alignment:
Q  44 ttttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatccct 111  Q
    |||||| | |||||||| ||||| |||||||  |||||||| ||||||||||||||||||||||||||    
T  40167282 ttttaatgatggagattaaaaatggagaaaatctgagaaaaatttcaatggagagaatccaaatccct 40167215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 45235105 - 45235179
Alignment:
Q  35 gttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatcc 109  Q
    |||||||||||| || | |||||||||||||| |||||||||| ||| ||||||||||| |||  ||||||||||    
T  45235105 gttgttgtatttcaatgatggagattgaaaatggagaaaacttaagagaattttcaatgaagatgatccaaatcc 45235179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 20078805 - 20078729
Alignment:
Q  28 aaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatcca 104  Q
    |||||| ||||||||||||||  | | |||||||| ||| ||||||  | |||||||||||||||| ||||||||||    
T  20078805 aaaagtagttgttgtattttattgatagagattgacaatggagaaagttggagaaaattttcaatgaagagaatcca 20078729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 111
Target Start/End: Original strand, 37526524 - 37526567
Alignment:
Q  68 gagaaaacttgagaaaattttcaatggagagaatccaaatccct 111  Q
    ||||||| |||||| ||||||||||||||||||||| |||||||    
T  37526524 gagaaaatttgagagaattttcaatggagagaatcctaatccct 37526567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 32429506 - 32429600
Alignment:
Q  13 acggagggagtaatgaaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaat 107  Q
    ||||||||||||||||| |||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  32429506 acggagggagtaatgaatagtggttgttatattttaatggtggagattgaaaatggagaaaacttgagaaaattttcaatggagaggatccaaat 32429600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 24324339 - 24324253
Alignment:
Q  23 taatgaaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatcc 109  Q
    ||||||||||| ||||||||||||||| ||| |||| ||||||| || |||| ||||||||||||||||| ||||  ||||||||||    
T  24324339 taatgaaaagtagttgttgtattttaatggttgagaatgaaaatggataaaatttgagaaaattttcaattgagaagatccaaatcc 24324253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 2158502 - 2158424
Alignment:
Q  27 gaaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatc 108  Q
    ||||| || |||||||||||||| |||||||||||||||| ||||||||||   | |||||||||||||||||||| |||||    
T  2158502 gaaaaatgattgttgtattttaatggtggagattgaaaatggagaaaactt---ataattttcaatggagagaatctaaatc 2158424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 5330662 - 5330582
Alignment:
Q  27 gaaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaat 107  Q
    |||||||||||  ||  |||||  ||| |||||| ||||| ||||||| |||| |||| ||||||||||||||||||||||    
T  5330662 gaaaagtggttagtgggttttagtggtagagattaaaaatggagaaaatttgaaaaaaatttcaatggagagaatccaaat 5330582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 11084152 - 11084197
Alignment:
Q  409 ttaactttagcagaaaagttattatcatcacttcaccataaaattt 454  Q
    ||||||||| ||||||||||||| |||| ||||||||||| |||||    
T  11084152 ttaactttaccagaaaagttattttcatgacttcaccatagaattt 11084197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 325 - 405
Target Start/End: Original strand, 42664894 - 42664974
Alignment:
Q  325 ggaaaattcaactaaatcacctaatctccaaattcgattgttgttatcataatacttcaatcacattcatataattttaac 405  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||  |||||||    
T  42664894 ggaaaattcaactaaatcacctaatccccaaattcgattgttattatcataaaacttcaatcacattcatatcgttttaac 42664974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 12907354 - 12907268
Alignment:
Q  23 taatgaaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatcc 109  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||| || | |||||||||||    
T  12907354 taataaaaagtgcttgttgtattttaaaggtggagattgaaaatggaaaaaacttgagaaaattttcaatagaaaaaatccaaatcc 12907268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 12906622 - 12906564
Alignment:
Q  50 aggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatc 108  Q
    ||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||    
T  12906622 aggtggagattgaaaatggaaaaaacttgagaaaattttcaatagagagaatccaaatc 12906564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 54776941 - 54776859
Alignment:
Q  27 gaaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatcc 109  Q
    |||||||||||  ||  |||||  ||| |||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  54776941 gaaaagtggttagtgggttttagtggtagagattaaaaatggagaaaacttgagaaaaatttcaatggagagaatccaaatcc 54776859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 106
Target Start/End: Complemental strand, 47804124 - 47804047
Alignment:
Q  27 gaaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaa 106  Q
    |||||||||||| ||| ||| || |||| | ||||||||| ||||||| |||||||  ||||||||||||||||||||||    
T  47804124 gaaaagtggttggtgtgtttaaatggtgaatattgaaaatggagaaaaattgagaa--ttttcaatggagagaatccaaa 47804047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 47804178 - 47804219
Alignment:
Q  68 gagaaaacttgagaaaattttcaatggagagaatccaaatcc 109  Q
    ||||||| |||||| ||||||||||||||||| |||||||||    
T  47804178 gagaaaaattgagagaattttcaatggagagattccaaatcc 47804219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 15536309 - 15536228
Alignment:
Q  34 ggttgttgtattttaaaggtggagattgaaaatagagaaaactt-gagaaaattttcaatggagagaatccaaatccctttt 114  Q
    |||||||||||||||| |||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| | ||||||    
T  15536309 ggttgttgtattttaatggtgaagattgaaaatggagaaaacttagagaaaattttcaatggagagaatccaactgcctttt 15536228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 22545203 - 22545122
Alignment:
Q  34 ggttgttgtattttaaaggtggagattgaaaatagagaaaactt-gagaaaattttcaatggagagaatccaaatccctttt 114  Q
    |||||||||||||||| |||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| | ||||||    
T  22545203 ggttgttgtattttaatggtgaagattgaaaatggagaaaacttagagaaaattttcaatggagagaatccaattgcctttt 22545122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 40032329 - 40032243
Alignment:
Q  23 taatgaaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatcc 109  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| ||||||| |||| |||| |||||||||| |  ||||||||||    
T  40032329 taatgaaaagtggttgttgtattttaatggtgtagattgaaaatggagaaaatttgaaaaaaatttcaatggaaatgatccaaatcc 40032243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 527987 - 528063
Alignment:
Q  23 taatgaaaagtggttgttgtattttaaag-gtggagattgaaaatagagaaaacttgagaaaattttcaatggagag 98  Q
    ||||||||||||||||||||||||| ||  ||||| ||||||||| ||||||| ||||||||||||| |||||||||    
T  527987 taatgaaaagtggttgttgtatttttaatagtggaaattgaaaatggagaaaatttgagaaaatttttaatggagag 528063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 23930398 - 23930450
Alignment:
Q  33 tggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaat 85  Q
    ||||||||||||||||| |||||||||||||||| |||||||||| |||||||    
T  23930398 tggttgttgtattttaatggtggagattgaaaatggagaaaacttaagaaaat 23930450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 18341668 - 18341740
Alignment:
Q  35 gttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaat 107  Q
    ||||||||||||||| | |||||||| ||||| ||||||| || ||  |||||||| || |||||||||||||    
T  18341668 gttgttgtattttaatgttggagattaaaaatggagaaaatttaagggaattttcagtgaagagaatccaaat 18341740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 108
Target Start/End: Original strand, 47148367 - 47148448
Alignment:
Q  27 gaaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatc 108  Q
    ||||||||| || | |||||||| ||| || ||| | ||  |||||||||||||| || ||| |||||||||||||||||||    
T  47148367 gaaaagtggctgatatattttaatggtagaaattaagaacggagaaaacttgagagaaattttaatggagagaatccaaatc 47148448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 40205177 - 40205093
Alignment:
Q  27 gaaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttg-agaaaattttcaatggagagaatccaaatccc 110  Q
    |||||||||||  ||  |||||| | |||||||| ||||| ||||||||||| | |||| ||||||||| ||| |||||||||||    
T  40205177 gaaaagtggttagtgggttttaatgatggagattaaaaatggagaaaacttgaaaaaaaatttcaatggggaggatccaaatccc 40205093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 5472699 - 5472762
Alignment:
Q  35 gttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagag 98  Q
    |||||||| |||||| ||||||||||||||||  ||||||||||||||||||||||||||||||    
T  5472699 gttgttgtgttttaatggtggagattgaaaatgaagaaaacttgagaaaattttcaatggagag 5472762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 109
Target Start/End: Complemental strand, 13073114 - 13073033
Alignment:
Q  27 gaaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatcc 109  Q
    ||||||||||||||  |||||||  ||| | ||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  13073114 gaaaagtggttgtttcattttaaccgtgta-attgaaaatggagaaaacttgagaaaattgtcaatggagagaatccaaatcc 13073033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 35619415 - 35619376
Alignment:
Q  28 aaaagtggttgttgtattttaaaggtggagattgaaaata 67  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  35619415 aaaagtggttgttgtattttaacggtggagattgaaaata 35619376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 38502063 - 38502126
Alignment:
Q  46 ttaaaggtggagattgaaaatagagaaaac-ttgagaaaattttcaatggagagaatccaaatc 108  Q
    |||| |||||||||||||||||| |||||| |||||| |||||| |||||||||||| ||||||    
T  38502063 ttaatggtggagattgaaaatagggaaaactttgagagaattttaaatggagagaattcaaatc 38502126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 23850078 - 23850024
Alignment:
Q  27 gaaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgaga 81  Q
    |||||||| |||| ||||||||| ||| |||||||||||| ||||||||||||||    
T  23850078 gaaaagtgattgtggtattttaatggtagagattgaaaatggagaaaacttgaga 23850024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 454
Target Start/End: Original strand, 25701217 - 25701265
Alignment:
Q  406 atgttaactttagcagaaaagttattatcatcacttcaccataaaattt 454  Q
    |||||||||||| || |||||| |||||||| |||||||||||||||||    
T  25701217 atgttaactttaccaaaaaagtcattatcatgacttcaccataaaattt 25701265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 5472601 - 5472566
Alignment:
Q  68 gagaaaacttgagaaaattttcaatggagagaatcc 103  Q
    |||||||||||||| |||||||||||||||||||||    
T  5472601 gagaaaacttgagagaattttcaatggagagaatcc 5472566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 35619474 - 35619517
Alignment:
Q  69 agaaaacttgagaaaatttt-caatggagagaatccaaatccct 111  Q
    ||||||||||||| |||||| |||||||||||||||||||||||    
T  35619474 agaaaacttgagagaatttttcaatggagagaatccaaatccct 35619517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 405
Target Start/End: Complemental strand, 51205143 - 51205106
Alignment:
Q  368 ttatcataatacttcaatcacattcatataattttaac 405  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  51205143 ttatcataaaacttcaatcacattcatatcattttaac 51205106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 406 - 454
Target Start/End: Original strand, 7152266 - 7152314
Alignment:
Q  406 atgttaactttagcagaaaagttattatcatcacttcaccataaaattt 454  Q
    |||||||||||| ||||||||| |||| ||| ||||||||||| |||||    
T  7152266 atgttaactttaccagaaaagtcattagcatgacttcaccatagaattt 7152314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 105
Target Start/End: Complemental strand, 30467223 - 30467145
Alignment:
Q  27 gaaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaa 105  Q
    ||||||||||||||||||| ||| | || ||||||||||| ||||||| || ||| |||||||||||||||||||||||    
T  30467223 gaaaagtggttgttgtattataatgatgaagattgaaaatggagaaaatttcagagaattttcaatggagagaatccaa 30467145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 34 - 114
Target Start/End: Complemental strand, 23690239 - 23690158
Alignment:
Q  34 ggttgttgtattttaaaggtggagattgaaaatagagaaaactt-gagaaaattttcaatggagagaatccaaatccctttt 114  Q
    |||||||||||||||| |||| |||||||||||  ||||||||| |||||||||||||||||||| ||||||| | ||||||    
T  23690239 ggttgttgtattttaatggtgaagattgaaaatgaagaaaacttagagaaaattttcaatggagataatccaattgcctttt 23690158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 37244928 - 37244997
Alignment:
Q  28 aaaagtggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggaga 97  Q
    |||| ||||||||||||||||| |||| |||||||||||  |||||| || |||||||||||||||||||    
T  37244928 aaaaatggttgttgtattttaatggtgaagattgaaaatgaagaaaagttcagaaaattttcaatggaga 37244997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 7243867 - 7243793
Alignment:
Q  35 gttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatcc 109  Q
    |||||||||||||||  ||| ||||||||||| ||||||| |  ||||||||||||| |||||| ||||||||||    
T  7243867 gttgttgtattttaatagtgaagattgaaaatggagaaaattgaagaaaattttcaacggagaggatccaaatcc 7243793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 109
Target Start/End: Original strand, 32112834 - 32112872
Alignment:
Q  71 aaaacttgagaaaattttcaatggagagaatccaaatcc 109  Q
    ||||||||||||||||||| ||||||||||| |||||||    
T  32112834 aaaacttgagaaaattttcgatggagagaattcaaatcc 32112872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 6679 - 6609
Alignment:
Q  33 tggttgttgtattttaaaggtggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaa 105  Q
    ||||||||||||||||| | |||| ||||||||| |||||||||||||  ||||||||| |||| ||||||||    
T  6679 tggttgttgtattttaatgatggatattgaaaatggagaaaacttgag--aattttcaacggagggaatccaa 6609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 6740 - 6781
Alignment:
Q  68 gagaaaacttgagaaaattttcaatggagagaatccaaatcc 109  Q
    ||||||||| |||| ||||||||||||||||||||| |||||    
T  6740 gagaaaactagagagaattttcaatggagagaatccgaatcc 6781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 31938088 - 31938035
Alignment:
Q  56 agattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaaatcc 109  Q
    ||||||||||| ||||||| ||||||||||||||||||||||| |||| |||||    
T  31938088 agattgaaaatggagaaaatttgagaaaattttcaatggagaggatccgaatcc 31938035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 30827725 - 30827674
Alignment:
Q  53 tggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatcca 104  Q
    |||||||||||||| |||||||||||||| ||||||||| ||||| ||||||    
T  30827725 tggagattgaaaatggagaaaacttgagagaattttcaacggagataatcca 30827674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 30762917 - 30762965
Alignment:
Q  68 gagaaaacttgagaaaattttcaatggagagaatccaaatccctttttc 116  Q
    |||||||| |||||||||| |||||||||||||| ||||||| ||||||    
T  30762917 gagaaaacatgagaaaattctcaatggagagaattcaaatccgtttttc 30762965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 30762844 - 30762792
Alignment:
Q  53 tggagattgaaaatagagaaaacttgagaaaattttcaatggagagaatccaa 105  Q
    |||| ||| ||||| |||||||| ||| |||| ||||||||||||||||||||    
T  30762844 tggatattaaaaatggagaaaacctgaaaaaaatttcaatggagagaatccaa 30762792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University