View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16773_high_5 (Length: 372)
Name: NF16773_high_5
Description: NF16773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16773_high_5 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 355
Target Start/End: Original strand, 3620686 - 3621035
Alignment:
| Q |
9 |
cgaagaatatcttgaaaagagtgttctgaacactatataacagggcatataaccaaaaagaa---atattgaaaatcatgagaacataccataacgacag |
105 |
Q |
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| T |
3620686 |
cgaacaatatcttgaaaagagtgttcggaacattatataacagggtataaaacaaaaaaatatatatattaaaagtcacgagaacataccataacgacgg |
3620785 |
T |
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| Q |
106 |
ctttgatgttatcattggtgagatcaattgagagacgaccctgattttttaactcaagtaacacgtcaactatatccttctcttcatcatctttcttcct |
205 |
Q |
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| T |
3620786 |
ctttgatgtgattattggtgagatcaattgagagacgaccctgattctttaactcaagtaacacgtcaactatatccttctcttcatcatcttttttcct |
3620885 |
T |
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| Q |
206 |
attattaggattgagatgttccttaagcacttgttcaaaaaactcatccaaagccttgaaagtgttgtcaacacgagcaattgccccggtgagtttatca |
305 |
Q |
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| T |
3620886 |
attattaggattgagatgttccttgaggacttgttcaaagaactcatccaaagccttgaaagtgttgtcaacacgagcaattgcccctgtgagtttatca |
3620985 |
T |
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| Q |
306 |
atccaccccaagaaaggaatataatctgaaacaaaaaatgaaaggaaaat |
355 |
Q |
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| T |
3620986 |
acccaccccataaaaggaatataatctgaaacaaaaaaggaaaggaaaat |
3621035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 87 - 355
Target Start/End: Original strand, 3631164 - 3631432
Alignment:
| Q |
87 |
gaacataccataacgacagctttgatgttatcattggtgagatcaattgagagacgaccctgattttttaactcaagtaacacgtcaactatatccttct |
186 |
Q |
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| T |
3631164 |
gaacataccataaggacggatttgatgtgatcattggtgagatcaattgagagacgaccctgattctttaactcaagtaacacgtcaactatatccttct |
3631263 |
T |
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| Q |
187 |
cttcatcatctttcttcctattattaggattgagatgttccttaagcacttgttcaaaaaactcatccaaagccttgaaagtgttgtcaacacgagcaat |
286 |
Q |
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| T |
3631264 |
cttcttcatctttcttccgattattaggattgagatgttcttgaaggacttgttcaagaaactcatccaaagccttgaaagtcttgtcaacacgagcatt |
3631363 |
T |
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| Q |
287 |
tgccccggtgagtttatcaatccaccccaagaaaggaatataatctgaaacaaaaaatgaaaggaaaat |
355 |
Q |
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| T |
3631364 |
tgccccagtgagtttatcaatccaccccataaaaggaatatgatctgaaacaaagaaggaaaggaaaat |
3631432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 87 - 355
Target Start/End: Complemental strand, 14921 - 14653
Alignment:
| Q |
87 |
gaacataccataacgacagctttgatgttatcattggtgagatcaattgagagacgaccctgattttttaactcaagtaacacgtcaactatatccttct |
186 |
Q |
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||||||||||||| ||| | |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14921 |
gaacataccataaggacggatttgatgtgatcattggtgagatcaattgagagacgaccctgattctttaactcaagtaacacgtcaactatatccttct |
14822 |
T |
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| Q |
187 |
cttcatcatctttcttcctattattaggattgagatgttccttaagcacttgttcaaaaaactcatccaaagccttgaaagtgttgtcaacacgagcaat |
286 |
Q |
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| T |
14821 |
cttcttcatctttcttccgattattaggattgagatgttcttgaaggacttgttcaagaaactcatccaaagccttgaaagtcttgtcaacacgagcatt |
14722 |
T |
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| Q |
287 |
tgccccggtgagtttatcaatccaccccaagaaaggaatataatctgaaacaaaaaatgaaaggaaaat |
355 |
Q |
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| T |
14721 |
tgccccagtgagtttatcaatccaccccataaaaggaatatgatctgaaacaaagaaggaaaggaaaat |
14653 |
T |
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