View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16773_low_10 (Length: 296)
Name: NF16773_low_10
Description: NF16773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16773_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 26453188 - 26453464
Alignment:
| Q |
18 |
caatcttagagcttctaaagcactggaacaaattttttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaaccactgaannn |
117 |
Q |
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| T |
26453188 |
caatcttggagcttctaaagcactggaacaaatattttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaaccactgaattt |
26453287 |
T |
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| Q |
118 |
nnnnctccaatgctagaactca------------ttttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctcactgct |
205 |
Q |
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| T |
26453288 |
ttttctccaatgctagaactcaacacacttcctattttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctctctgct |
26453387 |
T |
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| Q |
206 |
tttcttaccttttctgtactttttctaatgcagtcagtgctagaacatgttctagtgggagaatttttctccacagg |
282 |
Q |
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| T |
26453388 |
tttcttaccttttctgtactttttctaatgcagtcagtgctagaacatgttctagtgggagaattgttctccacagg |
26453464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 47680588 - 47680531
Alignment:
| Q |
52 |
ttttgttcttagctgctaaattgtgggtccaagtatgccatgtaggatttaacaacca |
109 |
Q |
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| T |
47680588 |
ttttgttcttagctgctaaatattgggtccaagtatgccatgtaggatttaacaacca |
47680531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 221
Target Start/End: Complemental strand, 47680488 - 47680406
Alignment:
| Q |
139 |
attttactttatgtaggctcctcatatttcttctctcattttccaatatacctcttctctcactgcttttcttaccttttctg |
221 |
Q |
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| T |
47680488 |
attttactttatgtaggaccctcgtgtttcttctcttatcatccattatacctcttctctctccccttctcttactttttctg |
47680406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 11727230 - 11727258
Alignment:
| Q |
43 |
gaacaaattttttgttcttagctgctaaa |
71 |
Q |
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| T |
11727230 |
gaacaaattttttgttcttagctgctaaa |
11727258 |
T |
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