View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16773_low_3 (Length: 486)
Name: NF16773_low_3
Description: NF16773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16773_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 215 - 437
Target Start/End: Original strand, 25933843 - 25934065
Alignment:
| Q |
215 |
gttagcatgttgcacaaaaataaaataccgttcatacctagtcacatcatggattgagtgaatttataacatcatacttagaacaagttgggtttcatca |
314 |
Q |
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| T |
25933843 |
gttagcatgctgcacaaaaataaaataccgttcatacgtagttacatcatggattgagtgaatttataacatcatacttagaacaagtctggtttcatca |
25933942 |
T |
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| Q |
315 |
tgtccgtgaaataatagaatattgaattggaagaagtttcataacttctctagttgaacgatgaagacccgaggcacacatttttcaattttcaacgggg |
414 |
Q |
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| T |
25933943 |
tgtccgtgaaataatagaatattgaattggaagaagtttcataacttctctaattgaacgatgaagacccaaggcacacatttttcaattttcaacgggg |
25934042 |
T |
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| Q |
415 |
gaatataccatcatcatgttgga |
437 |
Q |
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| T |
25934043 |
gaatgtaccatcatcatgttgga |
25934065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 25933629 - 25933779
Alignment:
| Q |
1 |
tgaaaacgacaaaggccacatgtgttagattttaagcttcttgataatgacattgatgtagaagacatgtttcagttcgaataaggtgaagaaagactga |
100 |
Q |
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| T |
25933629 |
tgaaaacgacaaaggccacatgtgttagattttaagcttcttgataatgacattgatgtagaagacatgttttagttcgaataatgtgaagaaagactga |
25933728 |
T |
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| Q |
101 |
tgcggttgtatcttaaggctgagtatattatggcgagccaatacaacccac |
151 |
Q |
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| T |
25933729 |
tgcggttgtatcttaaggctgagtatattatggcgagccaacacaacccac |
25933779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 28958320 - 28958381
Alignment:
| Q |
32 |
ttaagcttcttgataatgacattgatgtagaagacatgtttcagttcgaataaggtgaagaa |
93 |
Q |
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| T |
28958320 |
ttaagcttcttgataatgaggttgatgtagaagacatgtttaggttcgaagaaggtggagaa |
28958381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 32494005 - 32493938
Alignment:
| Q |
34 |
aagcttcttgataatgacattgatgtagaagacatgtttcagttcgaataaggtgaagaaagactgatg |
102 |
Q |
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| T |
32494005 |
aagcttcttgataatgacgttgatttagaagacatgttt-tgtttgaataaggtggagaaggagtgatg |
32493938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 8168718 - 8168826
Alignment:
| Q |
30 |
ttttaagcttcttgat-aatgacattgatgtagaagacatgtttcagttcgaataaggtgaagaaagactgatgcggttgtatcttaaggctgagtatat |
128 |
Q |
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| T |
8168718 |
ttttaagcttcttgaggaatgacattgatgtaaaatatatgttttggttcgaagaggataaagaaggaccgatgtggttgtatgttaaagttgagtagat |
8168817 |
T |
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| Q |
129 |
tatggcgag |
137 |
Q |
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|||| |||| |
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| T |
8168818 |
tatgtcgag |
8168826 |
T |
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