View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16773_low_5 (Length: 442)
Name: NF16773_low_5
Description: NF16773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16773_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 4 - 422
Target Start/End: Complemental strand, 16422591 - 16422154
Alignment:
| Q |
4 |
tgttgttagcttttccggtaacaccaaacttgataacttgccctgaagtaaatttgcgtggcttagccagtgctt-------------------gcaaga |
84 |
Q |
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|||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| |||| |||||| |
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| T |
16422591 |
tgttgttagcttctctggtaacacccaacttgataacctgccctgaagtaaatttgcgtggctcagccagagctttccactggccagtaaaaatgcaaga |
16422492 |
T |
|
| Q |
85 |
cagaccatcgtcatggcagaaatctatgagtaacttccatgtgtatccaaggtagtcaaccacggtcacctcattgcgttcagctggtaacacagcttga |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
16422491 |
cagaccatcgtcatggcagaaatctatgagtaacttccatgtgtatccaaggtagtcaaccacggtcacctcattgcgttcagctggtaacagaacttga |
16422392 |
T |
|
| Q |
185 |
caaaattctaggcagtccaatttatgtgaacattgaagaaacataagtaaatgtaaacaacaccgcattaacaccaaatactnnnnnnnctatatctaaa |
284 |
Q |
| |
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|||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
16422391 |
caaaatcctagccagtccaaattatgtgaacattgaagaaacataagtaaatgtaaacaacaccgcattaataccaaatactaaaaaaactatatctaaa |
16422292 |
T |
|
| Q |
285 |
gttaccaatcttccagaagtgacatcagcttaagtcaactctttcgcaagtagatgagtgaactttgtgggaagataatctgcatttgatccataccgaa |
384 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16422291 |
gttaccaatcttccagaagtgacatcaacttaagtcaactctttcgcaagtagatgagtgaactttgtgggaagataatctgcatttgatccataccgaa |
16422192 |
T |
|
| Q |
385 |
agaatgaatttcggtagtcttgtgcattatgttcttgt |
422 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
16422191 |
agaatgaatttcggtagtcttgtgcattatgttcttgt |
16422154 |
T |
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