View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16773_low_6 (Length: 376)

Name: NF16773_low_6
Description: NF16773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16773_low_6
NF16773_low_6
[»] chr4 (10 HSPs)
chr4 (8-360)||(6948110-6948462)
chr4 (35-155)||(11160646-11160766)
chr4 (32-146)||(11931944-11932058)
chr4 (88-155)||(11166276-11166343)
chr4 (89-153)||(11179291-11179355)
chr4 (107-153)||(11174669-11174715)
chr4 (107-153)||(11182131-11182177)
chr4 (89-190)||(11189953-11190054)
chr4 (228-293)||(11190104-11190169)
chr4 (94-152)||(52791991-52792049)
[»] chr7 (2 HSPs)
chr7 (11-302)||(662123-662414)
chr7 (34-144)||(6778514-6778624)
[»] chr8 (4 HSPs)
chr8 (86-146)||(24817214-24817274)
chr8 (223-277)||(24817071-24817125)
chr8 (103-152)||(24406504-24406553)
chr8 (103-152)||(24412655-24412704)
[»] chr5 (4 HSPs)
chr5 (101-146)||(8981943-8981988)
chr5 (101-152)||(8991442-8991493)
chr5 (65-146)||(35390508-35390589)
chr5 (228-277)||(36687067-36687116)


Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 8 - 360
Target Start/End: Original strand, 6948110 - 6948462
Alignment:
Q  8 cagatgagattgaagatcgtaacattatcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcggaactggcagcct 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6948110 cagatgagattgaagatcgtaacattatcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcagaactggcagcct 6948209  T
Q  108 caacatgcttcttgcaatactcaataaccttagccaagaacttgccgggtatgtgcggaaccaggatttcagtgtcgttggcagcatcatccgtcaaatt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6948210 caacatgcttcttgcaatactcaataaccttagccaagaacttgccgggtatgtgcggaaccaggatttcagtgtcgttggcagcaccatccgtcaaatt 6948309  T
Q  208 cttgattgattggaacacaacctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttctttatcgatgatgatgatgccatgagtgaa 307  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6948310 cttgattgattggaacacaacctcttcgatttcaaatgtctcaccgtcggaactcttcatggtgaacttctttgtcgatgatgatgatgccatgagtgaa 6948409  T
Q  308 gtgaatgaggaacagaataggcgtgagtactatttataatgttgtgcccaagc 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6948410 gtgaatgaggaacagaataggcgtgagtactatttataatgttgtgcccaagc 6948462  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 35 - 155
Target Start/End: Complemental strand, 11160766 - 11160646
Alignment:
Q  35 tcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcggaactggcagcctcaacatgcttcttgcaatactcaataa 134  Q
    |||||||| ||||||||||||||||||||||||| |||||| ||| || |||||||||| ||||||| ||| ||||||||||||||||||| ||||||||    
T  11160766 tcaaccttgacgaattcagtgtcccatttgttaatttcatcttcagagggcttttcatcagaactggtagcgtcaacatgcttcttgcaatgctcaataa 11160667  T
Q  135 ccttagccaagaacttgccgg 155  Q
    || ||||||||| ||||||||    
T  11160666 ccatagccaagatcttgccgg 11160646  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 11931944 - 11932058
Alignment:
Q  32 ttatcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcggaactggcagcctcaacatgcttcttgcaatactcaa 131  Q
    ||||||||||| ||||||||||  |||||||| || | |||||| ||  || ||||| ||||||||||  ||||||||||||||||||||||||||||||    
T  11931944 ttatcaaccttgacgaattcagcatcccatttcttcaattcatcctcggagggctttccatcggaactctcagcctcaacatgcttcttgcaatactcaa 11932043  T
Q  132 taaccttagccaaga 146  Q
    ||||||| |||||||    
T  11932044 taaccttcgccaaga 11932058  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 11166276 - 11166343
Alignment:
Q  88 ttcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgccgg 155  Q
    |||||| ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||||    
T  11166276 ttcatcagaacttgcagcatcaacatgtttcttgcaatactcaataaccatagccaagatcttgccgg 11166343  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 11179291 - 11179355
Alignment:
Q  89 tcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgcc 153  Q
    ||||| ||||| ||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  11179291 tcatcagaacttgcagcatcaacatgtttcttgcaatactcaataaccatagccaagatcttgcc 11179355  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 11174715 - 11174669
Alignment:
Q  107 tcaacatgcttcttgcaatactcaataaccttagccaagaacttgcc 153  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||    
T  11174715 tcaacatgtttcttgcaatactcgataaccttagccaagatcttgcc 11174669  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 11182177 - 11182131
Alignment:
Q  107 tcaacatgcttcttgcaatactcaataaccttagccaagaacttgcc 153  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||    
T  11182177 tcaacatgtttcttgcaatactcgataaccttagccaagatcttgcc 11182131  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 190
Target Start/End: Original strand, 11189953 - 11190054
Alignment:
Q  89 tcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgccgggtatgtgcggaaccaggatttcagtgtcgttgg 188  Q
    ||||| |||||  |||| |||||||| ||||||||||||||||||||| | ||||||| |||||| | || || || ||   ||||||||||||| ||||    
T  11189953 tcatcagaacttacagcatcaacatgtttcttgcaatactcaataaccatggccaagatcttgcctgttacgttcgaaatagggatttcagtgtcattgg 11190052  T
Q  189 ca 190  Q
    ||    
T  11190053 ca 11190054  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 11190104 - 11190169
Alignment:
Q  228 cctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttctttatcgatgatgatg 293  Q
    |||||||||||||||||||||| || || |||||||||| | ||| |||||| || ||||||||||    
T  11190104 cctcttcgatttcaaaggtctcgccttcagaactcttcaggatgatcttcttcattgatgatgatg 11190169  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 52791991 - 52792049
Alignment:
Q  94 ggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgc 152  Q
    |||||||| ||| ||||| |||||||| ||||||||||||||||| | ||||| |||||    
T  52791991 ggaactggtagcttcaacgtgcttcttacaatactcaataaccttcgtcaagatcttgc 52792049  T

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Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 662123 - 662414
Alignment:
Q  11 atgagattgaagatcgtaacattatcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcggaactggcagcctcaa 110  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  662123 atgagattgaagagcgtaacattatcaacctcgacgaattcagtgtaccatttgttaagtttatcatcaaagagcttttcataagaactggcagcctcaa 662222  T
Q  111 catgcttcttgcaatactcaataaccttagccaagaacttgccgggtatgtgcggaaccaggatttcagtgtcgttggcagcatcatccgtcaaattctt 210  Q
    |||| ||||||||||||||||||||||||||||| | |||||| | |||| ||||||||||||||||| |||||| |||| ||||||| |||||||||||    
T  662223 catgtttcttgcaatactcaataaccttagccaatatcttgcccgttatgcgcggaaccaggatttcaatgtcgtcggcaacatcatcggtcaaattctt 662322  T
Q  211 gattgattggaacacaacctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttctttatcgatgatgatgatgccatga 302  Q
    ||||||||||||||| ||||||||||||||||||||| | | |||||||||||||| ||||| ||||||  | |||||||||||||||||||    
T  662323 gattgattggaacaccacctcttcgatttcaaaggtcacgctgtcggaactcttcaaggtgatcttcttcgtggatgatgatgatgccatga 662414  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 6778624 - 6778514
Alignment:
Q  34 atcaacctttacgaattcagtgtcccatttgttaagttcatcatcaaagagcttttcatcggaactggcagcctcaacatgcttcttgcaatactcaata 133  Q
    ||||||||| ||||||||||  ||||| || ||||| ||||| ||  |  | |||||||||||||| || || |||||||||||||| || || |||||     
T  6778624 atcaaccttcacgaattcagcatcccaattcttaagatcatcttctgaaggtttttcatcggaactcgcggcatcaacatgcttcttacagtattcaatc 6778525  T
Q  134 accttagccaa 144  Q
    ||||| |||||    
T  6778524 accttcgccaa 6778514  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 24817274 - 24817214
Alignment:
Q  86 ttttcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaaga 146  Q
    ||||| |||||||| | ||||||||||||||||||||||||||||||||| || |||||||    
T  24817274 ttttcttcggaacttgtagcctcaacatgcttcttgcaatactcaataactttcgccaaga 24817214  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 277
Target Start/End: Complemental strand, 24817125 - 24817071
Alignment:
Q  223 cacaacctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttc 277  Q
    ||||||||| ||||||||||||||||| ||||||||||| |||| ||||| ||||    
T  24817125 cacaacctcgtcgatttcaaaggtctcgccgtcggaacttttcaaggtgatcttc 24817071  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 24406504 - 24406553
Alignment:
Q  103 agcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgc 152  Q
    |||||||||||||||||| |||||||| |||||||| ||||||| |||||    
T  24406504 agcctcaacatgcttcttacaatactcgataacctttgccaagatcttgc 24406553  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 24412704 - 24412655
Alignment:
Q  103 agcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgc 152  Q
    |||||||||||||||||| |||||||| |||||||| | ||||| |||||    
T  24412704 agcctcaacatgcttcttacaatactcgataacctttgtcaagatcttgc 24412655  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 8981988 - 8981943
Alignment:
Q  101 gcagcctcaacatgcttcttgcaatactcaataaccttagccaaga 146  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||    
T  8981988 gcagcctcaacatgcttcttgcaatactcaatcaccttcgccaaga 8981943  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 8991493 - 8991442
Alignment:
Q  101 gcagcctcaacatgcttcttgcaatactcaataaccttagccaagaacttgc 152  Q
    ||||| |||||||||||||||||||||||||| ||||| ||||||| |||||    
T  8991493 gcagcgtcaacatgcttcttgcaatactcaatcaccttcgccaagatcttgc 8991442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 35390508 - 35390589
Alignment:
Q  65 ttaagttcatcatcaaagagcttttcatcggaactggcagcctcaacatgcttcttgcaatactcaataaccttagccaaga 146  Q
    ||||| |||||||  ||| | ||||| ||||||||  | |||||||||||||| || ||||||||||||||||| |||||||    
T  35390508 ttaagatcatcatgtaagggtttttcttcggaactcccggcctcaacatgctttttacaatactcaataaccttcgccaaga 35390589  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 277
Target Start/End: Original strand, 36687067 - 36687116
Alignment:
Q  228 cctcttcgatttcaaaggtctcaccgtcggaactcttcatggtgaacttc 277  Q
    |||| ||||||||||||||||| |||||||||||||||| ||||| ||||    
T  36687067 cctcgtcgatttcaaaggtctccccgtcggaactcttcagggtgatcttc 36687116  T

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