View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16773_low_9 (Length: 301)
Name: NF16773_low_9
Description: NF16773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16773_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 4124703 - 4124422
Alignment:
| Q |
16 |
ccaacacccctagcaacaatccttgtaattgtcacgaattgacttcttaattggttcttttgtttttatttatgcaaaaatagatatccagaagctatac |
115 |
Q |
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| T |
4124703 |
ccaacacccctagcaacaatccttgtaattgtcacgaattgacttcttaattggttcttttgtttttatttatgcaaaaatagatatccagaagctatac |
4124604 |
T |
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| Q |
116 |
aaaacatcttccacaatccacatgaatcatgatagtttgaataggaatatgttacaaattacaaactcatcaaactcaaactaagttctagtattcctca |
215 |
Q |
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| T |
4124603 |
aaaacatcttccacaatccacatgaatcatgatagtttgaataggaatatgttacaaattacaaactcatcaaac-caaactaagttctagtattcctca |
4124505 |
T |
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| Q |
216 |
aaaaatcatcattgtctaaacaattttgttacacattaatggcttttctacgtcataatacaaatgacttattcatttcagtc |
298 |
Q |
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| T |
4124504 |
aaaaatcatcattgtctaaacaattttgttacacattaatggcttttctacgtcataatacaaatgacttattcattacagtc |
4124422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 143 - 292
Target Start/End: Complemental strand, 4135122 - 4134973
Alignment:
| Q |
143 |
catgatagtttgaataggaatatgttacaaattacaaactcatcaaactcaaactaagttctagtattcctcaaaaaatcatcattgtct-aaacaattt |
241 |
Q |
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||||||||||||| |||||| |||||||||||||||||||||| ||| | | ||||||||||||||||||||||||| |||||| ||| ||||| ||| |
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| T |
4135122 |
catgatagtttgattaggaacatgttacaaattacaaactcat-aaagcctatctaagttctagtattcctcaaaaaa-catcatcatctaaaacagttt |
4135025 |
T |
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| Q |
242 |
tgttacacattaatggc-ttttctacgtcataatacaaatgacttattcatt |
292 |
Q |
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| T |
4135024 |
tgttacacatttatggctttttctaagtcataatataaatgacttattcatt |
4134973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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